Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2705

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2703 and Shewana3_2704 are separated by 47 nucleotidesShewana3_2704 and Shewana3_2705 are separated by 109 nucleotidesShewana3_2705 and Shewana3_2706 are separated by 171 nucleotidesShewana3_2706 and Shewana3_2707 are separated by 152 nucleotides Shewana3_2703: Shewana3_2703 - TonB-dependent receptor (RefSeq), at 3,230,269 to 3,233,124 _2703 Shewana3_2704: Shewana3_2704 - helix-turn-helix, type 11 domain-containing protein (RefSeq), at 3,233,172 to 3,233,870 _2704 Shewana3_2705: Shewana3_2705 - transcription activator, effector binding (RefSeq), at 3,233,980 to 3,234,429 _2705 Shewana3_2706: Shewana3_2706 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,234,601 to 3,234,984 _2706 Shewana3_2707: Shewana3_2707 - phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq), at 3,235,137 to 3,236,858 _2707 Position (kb) 3233 3234 3235Strain fitness (log2 ratio) -3 -2 -1 0 1at 3233.020 kb on - strandat 3233.065 kb on + strandat 3233.765 kb on - strand, within Shewana3_2704at 3233.798 kb on + strand, within Shewana3_2704at 3234.072 kb on + strand, within Shewana3_2705at 3234.190 kb on - strand, within Shewana3_2705at 3234.274 kb on - strand, within Shewana3_2705at 3234.426 kb on + strandat 3234.765 kb on + strand, within Shewana3_2706at 3234.853 kb on - strand, within Shewana3_2706at 3235.068 kb on - strandat 3235.200 kb on - strandat 3235.410 kb on - strand, within Shewana3_2707

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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3,233,020 - -0.2
3,233,065 + -0.0
3,233,765 - Shewana3_2704 0.85 +0.5
3,233,798 + Shewana3_2704 0.90 +0.4
3,234,072 + Shewana3_2705 0.20 +0.5
3,234,190 - Shewana3_2705 0.47 -1.3
3,234,274 - Shewana3_2705 0.65 -1.8
3,234,426 + -0.6
3,234,765 + Shewana3_2706 0.43 -0.3
3,234,853 - Shewana3_2706 0.66 -2.1
3,235,068 - -3.2
3,235,200 - +0.1
3,235,410 - Shewana3_2707 0.16 +0.2

Or see this region's nucleotide sequence