Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0076

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0074 and Shewana3_0075 are separated by 88 nucleotidesShewana3_0075 and Shewana3_0076 are separated by 3 nucleotidesShewana3_0076 and Shewana3_0077 are separated by 92 nucleotidesShewana3_0077 and Shewana3_0078 are separated by 46 nucleotides Shewana3_0074: Shewana3_0074 - transport protein, putative (RefSeq), at 86,091 to 87,230 _0074 Shewana3_0075: Shewana3_0075 - ABC transporter related (RefSeq), at 87,319 to 88,053 _0075 Shewana3_0076: Shewana3_0076 - TAP domain-containing protein (RefSeq), at 88,057 to 89,676 _0076 Shewana3_0077: Shewana3_0077 - GntR family transcriptional regulator (RefSeq), at 89,769 to 90,134 _0077 Shewana3_0078: Shewana3_0078 - ABC transporter related (RefSeq), at 90,181 to 91,044 _0078 Position (kb) 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 87.095 kb on - strand, within Shewana3_0074at 87.169 kb on - strandat 87.331 kb on + strandat 87.334 kb on - strandat 87.384 kb on - strandat 87.402 kb on + strand, within Shewana3_0075at 87.405 kb on - strand, within Shewana3_0075at 87.433 kb on - strand, within Shewana3_0075at 87.738 kb on + strand, within Shewana3_0075at 87.783 kb on + strand, within Shewana3_0075at 87.783 kb on + strand, within Shewana3_0075at 87.785 kb on + strand, within Shewana3_0075at 87.791 kb on - strand, within Shewana3_0075at 87.801 kb on - strand, within Shewana3_0075at 87.803 kb on - strand, within Shewana3_0075at 87.839 kb on + strand, within Shewana3_0075at 87.896 kb on + strand, within Shewana3_0075at 87.896 kb on + strand, within Shewana3_0075at 88.006 kb on + strandat 88.014 kb on - strandat 88.247 kb on + strand, within Shewana3_0076at 88.336 kb on + strand, within Shewana3_0076at 88.460 kb on - strand, within Shewana3_0076at 88.482 kb on + strand, within Shewana3_0076at 88.490 kb on + strand, within Shewana3_0076at 88.490 kb on + strand, within Shewana3_0076at 88.553 kb on - strand, within Shewana3_0076at 88.651 kb on + strand, within Shewana3_0076at 88.729 kb on - strand, within Shewana3_0076at 88.838 kb on - strand, within Shewana3_0076at 88.852 kb on + strand, within Shewana3_0076at 88.861 kb on + strand, within Shewana3_0076at 89.023 kb on - strand, within Shewana3_0076at 89.046 kb on - strand, within Shewana3_0076at 89.100 kb on + strand, within Shewana3_0076at 89.216 kb on - strand, within Shewana3_0076at 89.299 kb on + strand, within Shewana3_0076at 89.307 kb on - strand, within Shewana3_0076at 89.423 kb on - strand, within Shewana3_0076at 89.458 kb on + strand, within Shewana3_0076at 89.472 kb on + strand, within Shewana3_0076at 89.500 kb on - strand, within Shewana3_0076at 89.661 kb on - strandat 89.828 kb on - strand, within Shewana3_0077at 89.885 kb on - strand, within Shewana3_0077at 89.968 kb on + strand, within Shewana3_0077at 90.425 kb on - strand, within Shewana3_0078at 90.454 kb on - strand, within Shewana3_0078at 90.569 kb on + strand, within Shewana3_0078at 90.569 kb on + strand, within Shewana3_0078at 90.589 kb on + strand, within Shewana3_0078at 90.602 kb on + strand, within Shewana3_0078at 90.610 kb on - strand, within Shewana3_0078at 90.612 kb on + strand, within Shewana3_0078at 90.625 kb on + strand, within Shewana3_0078

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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87,095 - Shewana3_0074 0.88 +0.1
87,169 - +0.4
87,331 + +0.9
87,334 - -2.2
87,384 - +0.4
87,402 + Shewana3_0075 0.11 +0.3
87,405 - Shewana3_0075 0.12 -0.2
87,433 - Shewana3_0075 0.16 +0.1
87,738 + Shewana3_0075 0.57 -0.3
87,783 + Shewana3_0075 0.63 -0.1
87,783 + Shewana3_0075 0.63 -0.4
87,785 + Shewana3_0075 0.63 +0.8
87,791 - Shewana3_0075 0.64 -1.6
87,801 - Shewana3_0075 0.66 +0.0
87,803 - Shewana3_0075 0.66 +0.5
87,839 + Shewana3_0075 0.71 +0.4
87,896 + Shewana3_0075 0.79 -0.1
87,896 + Shewana3_0075 0.79 -3.5
88,006 + -0.5
88,014 - +0.2
88,247 + Shewana3_0076 0.12 -1.9
88,336 + Shewana3_0076 0.17 -0.4
88,460 - Shewana3_0076 0.25 -2.3
88,482 + Shewana3_0076 0.26 +0.1
88,490 + Shewana3_0076 0.27 +0.0
88,490 + Shewana3_0076 0.27 -0.1
88,553 - Shewana3_0076 0.31 -2.9
88,651 + Shewana3_0076 0.37 +0.7
88,729 - Shewana3_0076 0.41 +0.2
88,838 - Shewana3_0076 0.48 -2.0
88,852 + Shewana3_0076 0.49 +0.6
88,861 + Shewana3_0076 0.50 -1.8
89,023 - Shewana3_0076 0.60 -0.2
89,046 - Shewana3_0076 0.61 +0.0
89,100 + Shewana3_0076 0.64 -0.4
89,216 - Shewana3_0076 0.72 +1.8
89,299 + Shewana3_0076 0.77 -0.2
89,307 - Shewana3_0076 0.77 -0.1
89,423 - Shewana3_0076 0.84 +0.5
89,458 + Shewana3_0076 0.86 -1.6
89,472 + Shewana3_0076 0.87 -2.7
89,500 - Shewana3_0076 0.89 -0.3
89,661 - -0.0
89,828 - Shewana3_0077 0.16 +0.5
89,885 - Shewana3_0077 0.32 -0.1
89,968 + Shewana3_0077 0.54 -0.8
90,425 - Shewana3_0078 0.28 -2.2
90,454 - Shewana3_0078 0.32 -0.0
90,569 + Shewana3_0078 0.45 +0.3
90,569 + Shewana3_0078 0.45 -2.4
90,589 + Shewana3_0078 0.47 +0.3
90,602 + Shewana3_0078 0.49 -0.2
90,610 - Shewana3_0078 0.50 -2.3
90,612 + Shewana3_0078 0.50 +0.9
90,625 + Shewana3_0078 0.51 +0.2

Or see this region's nucleotide sequence