Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2574 and Shew_2575 are separated by 46 nucleotides Shew_2575 and Shew_2576 are separated by 12 nucleotides Shew_2576 and Shew_2577 are separated by 90 nucleotides
Shew_2574: Shew_2574 - pyruvate carboxyltransferase (RefSeq), at 3,034,273 to 3,035,178
_2574
Shew_2575: Shew_2575 - 3-oxoacid CoA-transferase, A subunit (RefSeq), at 3,035,225 to 3,035,926
_2575
Shew_2576: Shew_2576 - 3-oxoacid CoA-transferase, B subunit (RefSeq), at 3,035,939 to 3,036,595
_2576
Shew_2577: Shew_2577 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,036,686 to 3,038,260
_2577
Position (kb)
3035
3036
3037 Strain fitness (log2 ratio)
-1
0
1 at 3035.162 kb on - strand at 3036.139 kb on - strand, within Shew_2576 at 3036.202 kb on - strand, within Shew_2576 at 3036.597 kb on - strand at 3036.786 kb on + strand at 3036.786 kb on - strand at 3036.804 kb on - strand at 3036.893 kb on - strand, within Shew_2577 at 3037.329 kb on - strand, within Shew_2577 at 3037.381 kb on - strand, within Shew_2577
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,035,162 - +0.8 3,036,139 - Shew_2576 0.30 +0.8 3,036,202 - Shew_2576 0.40 +0.8 3,036,597 - +0.5 3,036,786 + -1.2 3,036,786 - +0.2 3,036,804 - -0.3 3,036,893 - Shew_2577 0.13 +0.2 3,037,329 - Shew_2577 0.41 -0.2 3,037,381 - Shew_2577 0.44 -0.9
Or see this region's nucleotide sequence