Strain Fitness in Shewanella loihica PV-4 around Shew_1306

Experiment: L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate (C)
1,512,934	+				+0.1
1,512,972	+		Shew_1305	0.16	-1.3
1,513,018	+		Shew_1305	0.26	+0.1
1,513,026	-		Shew_1305	0.28	-2.7
1,513,174	-		Shew_1305	0.62	+1.0
1,513,202	+		Shew_1305	0.68	+1.1
1,513,206	+		Shew_1305	0.69	+0.3
1,513,206	+		Shew_1305	0.69	+0.3
1,513,214	-		Shew_1305	0.71	-0.5
1,513,214	-		Shew_1305	0.71	-1.0
1,513,312	+				-0.3
1,513,312	+				+1.9
1,513,312	+				+0.3
1,513,320	-				+2.9
1,513,321	-				+0.6
1,513,357	-				-0.2
1,513,379	-				-2.2
1,513,417	-				+0.3
1,513,442	+				-1.7
1,513,452	+				-0.4
1,513,452	+				-0.0
1,513,452	+				-0.8
1,513,452	+				+1.3
1,513,453	+				-0.7
1,513,460	-				-0.2
1,513,461	-				-0.7
1,513,479	-				+0.7
1,513,501	+				+1.0
1,513,516	-				-1.1
1,513,599	+				+1.0
1,513,608	-				-0.2
1,513,608	-				+0.9
1,513,942	-				+0.1
1,513,947	+				+0.9
1,513,947	+				-0.7
1,513,955	-				+1.1
1,513,955	-				-1.5
1,513,955	-				+1.9
1,513,957	+				+0.1
1,513,965	-				+1.3
1,513,965	-				-0.1
1,513,965	-				-0.2
1,513,987	+				-0.2
1,513,995	+		Shew_1306	0.10	-1.5
1,513,995	-		Shew_1306	0.10	+2.9
1,513,999	-		Shew_1306	0.11	+0.2
1,514,007	+		Shew_1306	0.12	-0.1
1,514,020	+		Shew_1306	0.13	+1.5
1,514,021	+		Shew_1306	0.14	+2.3
1,514,021	+		Shew_1306	0.14	+0.1
1,514,021	+		Shew_1306	0.14	+0.2
1,514,021	+		Shew_1306	0.14	+0.7
1,514,028	-		Shew_1306	0.14	-1.0
1,514,028	-		Shew_1306	0.14	+0.5
1,514,051	+		Shew_1306	0.17	-1.6
1,514,077	-		Shew_1306	0.20	+0.5
1,514,111	+		Shew_1306	0.24	-0.4
1,514,124	+		Shew_1306	0.26	-0.2
1,514,126	+		Shew_1306	0.26	+0.6
1,514,136	+		Shew_1306	0.27	+0.1
1,514,142	+		Shew_1306	0.28	-0.7
1,514,150	-		Shew_1306	0.29	+0.1
1,514,171	+		Shew_1306	0.32	+0.2
1,514,174	-		Shew_1306	0.32	-0.1
1,514,201	+		Shew_1306	0.35	-2.0
1,514,201	+		Shew_1306	0.35	+0.4
1,514,201	+		Shew_1306	0.35	+0.0
1,514,209	-		Shew_1306	0.36	-0.7
1,514,209	-		Shew_1306	0.36	+1.4
1,514,209	-		Shew_1306	0.36	+1.4
1,514,215	+		Shew_1306	0.37	-0.2
1,514,257	+		Shew_1306	0.42	-1.3
1,514,257	+		Shew_1306	0.42	+0.0
1,514,258	+		Shew_1306	0.42	+0.9
1,514,258	-		Shew_1306	0.42	-0.1
1,514,264	+		Shew_1306	0.43	-1.0
1,514,269	+		Shew_1306	0.44	-0.1
1,514,271	+		Shew_1306	0.44	+0.1
1,514,286	+		Shew_1306	0.46	+0.7
1,514,289	-		Shew_1306	0.46	+0.8
1,514,343	+		Shew_1306	0.53	-0.3
1,514,349	-		Shew_1306	0.53	+0.9
1,514,350	+		Shew_1306	0.54	+0.5
1,514,351	-		Shew_1306	0.54	+0.6
1,514,358	-		Shew_1306	0.55	-0.0
1,514,358	-		Shew_1306	0.55	+0.4
1,514,360	+		Shew_1306	0.55	-0.3
1,514,360	+		Shew_1306	0.55	+1.1
1,514,360	+		Shew_1306	0.55	-0.3
1,514,361	+		Shew_1306	0.55	-1.3
1,514,362	+		Shew_1306	0.55	+1.2
1,514,362	+		Shew_1306	0.55	-0.0
1,514,362	-		Shew_1306	0.55	+1.5
1,514,365	+		Shew_1306	0.55	-0.8
1,514,368	-		Shew_1306	0.56	+0.2
1,514,368	-		Shew_1306	0.56	+0.0
1,514,368	-		Shew_1306	0.56	+0.9
1,514,369	+		Shew_1306	0.56	-0.1
1,514,369	-		Shew_1306	0.56	-0.7
1,514,370	-		Shew_1306	0.56	+1.4
1,514,370	-		Shew_1306	0.56	-0.3
1,514,432	+		Shew_1306	0.64	-0.7
1,514,442	+		Shew_1306	0.65	-1.3
1,514,453	+		Shew_1306	0.66	+1.2
1,514,493	-		Shew_1306	0.71	+1.2
1,514,501	-		Shew_1306	0.72	-1.7
1,514,501	-		Shew_1306	0.72	-0.3
1,514,507	-		Shew_1306	0.73	-0.2
1,514,507	-		Shew_1306	0.73	-0.5
1,514,509	+		Shew_1306	0.73	-0.0
1,514,561	+		Shew_1306	0.79	-1.9
1,514,562	-		Shew_1306	0.79	-1.3
1,514,569	-		Shew_1306	0.80	+0.5
1,514,572	+		Shew_1306	0.81	-1.3
1,514,576	-		Shew_1306	0.81	+0.7
1,514,578	+		Shew_1306	0.81	+1.3
1,514,592	+		Shew_1306	0.83	-0.7
1,514,600	-		Shew_1306	0.84	+2.6
1,514,633	+		Shew_1306	0.88	-0.4
1,514,633	+		Shew_1306	0.88	+0.2
1,514,637	+		Shew_1306	0.88	-0.8
1,514,638	+		Shew_1306	0.89	-0.1
1,514,645	+		Shew_1306	0.89	-1.6
1,514,645	+		Shew_1306	0.89	+0.3
1,514,645	+		Shew_1306	0.89	+0.2
1,514,646	-		Shew_1306	0.90	-0.0
1,514,652	-				+1.3
1,514,653	-				-0.3
1,514,658	+				+0.3
1,514,659	+				+0.1
1,514,659	+				-1.1
1,514,659	+				+0.3
1,514,659	+				+0.2
1,514,666	-				+0.7
1,514,666	-				-0.0
1,514,667	-				+0.6
1,514,667	-				+0.4
1,514,667	-				+0.5
1,514,667	-				+0.6
1,514,667	-				-1.7
1,514,667	-				+0.2
1,514,667	-				+1.0
1,514,676	-				+2.6
1,514,716	+				+0.6
1,514,727	+				+0.0
1,514,743	+				+1.3
1,514,746	-				+0.3
1,514,751	-				+0.4
1,514,768	-				-0.9
1,514,770	-				+1.3
1,514,796	+				+1.8
1,514,810	+				-0.7
1,514,812	+				+0.8
1,514,820	-				-0.3
1,514,821	+				-1.7
1,514,821	+				-1.8
1,514,821	+				-1.7
1,514,821	+				+0.1
1,514,821	+				-0.3
1,514,821	+				+0.4
1,514,829	-				-0.1
1,514,829	-				-0.2
1,514,829	-				-0.7
1,514,829	-				-2.5
1,514,829	-				-0.2
1,514,829	-				+1.1
1,514,847	+				+0.0
1,514,848	-				+0.6
1,514,860	+				+1.7
1,514,860	+				+2.2
1,514,863	-				-1.2
1,514,868	-				+0.6
1,514,868	-				+0.5
1,514,870	+				-0.9
1,514,870	+				+0.3
1,514,870	+				-0.2
1,514,870	+				+1.3
1,514,870	+				-1.3
1,514,870	+				-0.7
1,514,870	+				+0.2
1,514,870	+				-0.2
1,514,870	+				+0.3
1,514,870	+				+0.4
1,514,870	+				-0.3
1,514,870	+				+0.1
1,514,870	+				+1.1
1,514,878	-				+2.7
1,514,878	-				+0.7
1,514,878	-				-0.1
1,514,924	-				+1.1
1,514,931	-				+0.4
1,514,934	+				-0.2
1,514,934	+				+0.4
1,514,934	+				-0.2
1,514,934	+				+0.7
1,514,934	+				-2.5
1,514,934	+				-0.7
1,514,934	+				-2.1
1,514,934	+				-0.7
1,514,934	+				-0.5
1,514,934	+				-0.7
1,514,934	+				+0.7
1,514,934	+				+0.8
1,514,934	+				+0.2
1,514,934	+				-1.0
1,514,934	+				+0.2
1,514,934	+				+0.3
1,514,934	+				+1.8
1,514,934	+				+0.8
1,514,934	+				-0.2
1,514,934	+				+0.1
1,514,934	+				-0.7
1,514,942	-				-0.7
1,514,942	-				-2.3
1,514,942	-				-1.5
1,514,942	-				+0.0
1,514,942	-				+0.0
1,514,942	-				+0.3
1,514,942	-				-0.9
1,514,942	-				-1.7
1,514,942	-				+0.3
1,514,942	-				+0.6
1,514,942	-				+0.3
1,514,942	-				-1.2
1,514,942	-				+0.3
1,514,942	-				+0.5
1,514,942	-				+1.3
1,514,942	-				+0.4
1,514,942	-				+1.0
1,514,942	-				+1.1
1,514,942	-				-0.5
1,514,942	-				-0.7
1,514,942	-				+0.3
1,514,942	-				+0.6
1,514,944	+				+0.3
1,514,979	+		Shew_1307	0.11	-2.5
1,514,987	-		Shew_1307	0.12	+0.9
1,514,992	+		Shew_1307	0.12	+0.0
1,514,992	+		Shew_1307	0.12	-0.7
1,514,992	+		Shew_1307	0.12	+0.7
1,514,992	+		Shew_1307	0.12	-0.3
1,515,000	-		Shew_1307	0.13	+0.3
1,515,002	+		Shew_1307	0.13	-0.4
1,515,002	+		Shew_1307	0.13	-0.7
1,515,002	+		Shew_1307	0.13	+0.7
1,515,002	+		Shew_1307	0.13	-0.5
1,515,002	+		Shew_1307	0.13	-0.1
1,515,002	+		Shew_1307	0.13	+0.6
1,515,010	-		Shew_1307	0.14	-0.3
1,515,010	-		Shew_1307	0.14	+0.1
1,515,010	-		Shew_1307	0.14	+0.5
1,515,010	-		Shew_1307	0.14	+0.3
1,515,010	-		Shew_1307	0.14	-0.2
1,515,010	-		Shew_1307	0.14	+0.7
1,515,010	-		Shew_1307	0.14	-0.3
1,515,010	-		Shew_1307	0.14	-0.5
1,515,010	-		Shew_1307	0.14	+0.5
1,515,010	-		Shew_1307	0.14	+0.6
1,515,010	-		Shew_1307	0.14	-0.2
1,515,033	-		Shew_1307	0.16	+0.8
1,515,041	+		Shew_1307	0.16	-0.7
1,515,049	+		Shew_1307	0.17	+1.8
1,515,087	+		Shew_1307	0.20	+0.1
1,515,093	+		Shew_1307	0.21	-0.5
1,515,095	-		Shew_1307	0.21	+0.3
1,515,103	+		Shew_1307	0.22	-0.7
1,515,109	-		Shew_1307	0.22	-0.2
1,515,139	+		Shew_1307	0.25	-2.1
1,515,149	+		Shew_1307	0.26	+0.3
1,515,157	+		Shew_1307	0.26	+0.0
1,515,161	-		Shew_1307	0.27	-0.3
1,515,167	-		Shew_1307	0.27	+2.7
1,515,189	+		Shew_1307	0.29	-0.0
1,515,190	+		Shew_1307	0.29	+0.5
1,515,202	+		Shew_1307	0.30	-1.3
1,515,211	+		Shew_1307	0.31	+0.3
1,515,211	+		Shew_1307	0.31	-0.7
1,515,211	+		Shew_1307	0.31	-1.0
1,515,213	+		Shew_1307	0.31	-2.6
1,515,213	+		Shew_1307	0.31	+0.1
1,515,213	+		Shew_1307	0.31	+0.7
1,515,219	-		Shew_1307	0.32	+1.0
1,515,219	-		Shew_1307	0.32	+1.6
1,515,219	-		Shew_1307	0.32	+1.3
1,515,221	-		Shew_1307	0.32	+0.4
1,515,221	-		Shew_1307	0.32	-0.1
1,515,293	-		Shew_1307	0.38	+0.3
1,515,300	+		Shew_1307	0.38	-0.9
1,515,302	+		Shew_1307	0.39	-1.7
1,515,308	-		Shew_1307	0.39	+0.0
1,515,308	-		Shew_1307	0.39	-0.3
1,515,308	-		Shew_1307	0.39	+0.1
1,515,308	-		Shew_1307	0.39	+0.3
1,515,310	-		Shew_1307	0.39	+1.3
1,515,379	+		Shew_1307	0.45	-0.1
1,515,384	+		Shew_1307	0.46	+0.6
1,515,390	+		Shew_1307	0.46	-1.3
1,515,405	+		Shew_1307	0.47	+0.3
1,515,407	+		Shew_1307	0.48	+1.2
1,515,407	+		Shew_1307	0.48	-1.3
1,515,407	+		Shew_1307	0.48	-0.1
1,515,417	+		Shew_1307	0.48	-0.6
1,515,429	-		Shew_1307	0.49	+0.8
1,515,435	-		Shew_1307	0.50	-2.1
1,515,448	-		Shew_1307	0.51	-1.3
1,515,477	+		Shew_1307	0.53	-0.3
1,515,477	+		Shew_1307	0.53	+0.4
1,515,477	+		Shew_1307	0.53	+0.4
1,515,483	-		Shew_1307	0.54	+2.1
1,515,485	-		Shew_1307	0.54	+0.5
1,515,485	-		Shew_1307	0.54	-0.3
1,515,485	-		Shew_1307	0.54	+0.5
1,515,485	-		Shew_1307	0.54	+0.7
1,515,485	-		Shew_1307	0.54	-2.3
1,515,492	-		Shew_1307	0.55	-1.3
1,515,561	-		Shew_1307	0.61	+0.4
1,515,566	+		Shew_1307	0.61	+0.2
1,515,569	+		Shew_1307	0.61	+0.3
1,515,574	-		Shew_1307	0.62	+1.7
1,515,575	+		Shew_1307	0.62	+0.8
1,515,575	+		Shew_1307	0.62	+0.3
1,515,576	+		Shew_1307	0.62	+1.3
1,515,577	-		Shew_1307	0.62	-0.7
1,515,582	-		Shew_1307	0.62	+0.4
1,515,595	-		Shew_1307	0.64	+0.4
1,515,620	+		Shew_1307	0.66	-0.2
1,515,620	+		Shew_1307	0.66	+0.6
1,515,620	+		Shew_1307	0.66	+1.1
1,515,620	+		Shew_1307	0.66	+1.5
1,515,628	-		Shew_1307	0.66	+0.3
1,515,628	-		Shew_1307	0.66	+1.5
1,515,628	-		Shew_1307	0.66	+3.6
1,515,628	-		Shew_1307	0.66	+0.3
1,515,628	-		Shew_1307	0.66	+0.5
1,515,628	-		Shew_1307	0.66	+1.5
1,515,630	+		Shew_1307	0.66	-0.3
1,515,638	-		Shew_1307	0.67	-0.7
1,515,638	-		Shew_1307	0.67	-0.2
1,515,654	-		Shew_1307	0.69	+0.3
1,515,654	-		Shew_1307	0.69	+0.4
1,515,666	+		Shew_1307	0.70	+0.4
1,515,666	+		Shew_1307	0.70	+2.1
1,515,666	-		Shew_1307	0.70	+0.5
1,515,671	-		Shew_1307	0.70	-1.7
1,515,674	+		Shew_1307	0.70	+0.8
1,515,682	-		Shew_1307	0.71	-0.3
1,515,682	-		Shew_1307	0.71	-0.4