Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0681 and Shew_0682 are separated by 75 nucleotides Shew_0682 and Shew_0683 overlap by 11 nucleotides
Shew_0681: Shew_0681 - penicillin V acylase-like protein (RefSeq), at 775,175 to 776,254
_0681
Shew_0682: Shew_0682 - major facilitator superfamily permease (RefSeq), at 776,330 to 777,433
_0682
Shew_0683: Shew_0683 - secretion protein HlyD family protein (RefSeq), at 777,423 to 778,487
_0683
Position (kb) 776
777
778 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 775.402 kb on + strand, within Shew_0681 at 775.410 kb on - strand, within Shew_0681 at 775.450 kb on + strand, within Shew_0681 at 775.557 kb on - strand, within Shew_0681 at 775.711 kb on + strand, within Shew_0681 at 775.719 kb on - strand, within Shew_0681 at 775.779 kb on + strand, within Shew_0681 at 775.859 kb on - strand, within Shew_0681 at 775.929 kb on + strand, within Shew_0681 at 775.932 kb on - strand, within Shew_0681 at 776.042 kb on + strand, within Shew_0681 at 776.555 kb on - strand, within Shew_0682 at 776.737 kb on - strand, within Shew_0682 at 777.027 kb on - strand, within Shew_0682 at 777.492 kb on - strand at 777.494 kb on + strand at 777.497 kb on - strand at 777.499 kb on + strand at 777.505 kb on - strand at 777.507 kb on - strand at 777.746 kb on + strand, within Shew_0683 at 777.836 kb on + strand, within Shew_0683 at 777.836 kb on + strand, within Shew_0683 at 777.844 kb on - strand, within Shew_0683 at 777.844 kb on - strand, within Shew_0683 at 777.844 kb on - strand, within Shew_0683 at 777.844 kb on - strand, within Shew_0683 at 777.880 kb on + strand, within Shew_0683 at 777.954 kb on + strand, within Shew_0683 at 778.061 kb on - strand, within Shew_0683 at 778.313 kb on + strand, within Shew_0683 at 778.359 kb on + strand, within Shew_0683 at 778.359 kb on + strand, within Shew_0683 at 778.388 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 775,402 + Shew_0681 0.21 +0.2 775,410 - Shew_0681 0.22 +0.0 775,450 + Shew_0681 0.25 +0.2 775,557 - Shew_0681 0.35 -2.9 775,711 + Shew_0681 0.50 -0.4 775,719 - Shew_0681 0.50 +0.7 775,779 + Shew_0681 0.56 +1.1 775,859 - Shew_0681 0.63 +0.4 775,929 + Shew_0681 0.70 -0.2 775,932 - Shew_0681 0.70 -0.6 776,042 + Shew_0681 0.80 -1.9 776,555 - Shew_0682 0.20 -0.3 776,737 - Shew_0682 0.37 -0.6 777,027 - Shew_0682 0.63 -0.4 777,492 - -0.1 777,494 + +1.0 777,497 - -1.2 777,499 + -0.2 777,505 - -2.4 777,507 - -0.0 777,746 + Shew_0683 0.30 +0.1 777,836 + Shew_0683 0.39 -0.4 777,836 + Shew_0683 0.39 -0.7 777,844 - Shew_0683 0.40 +0.6 777,844 - Shew_0683 0.40 -0.1 777,844 - Shew_0683 0.40 -0.5 777,844 - Shew_0683 0.40 -0.0 777,880 + Shew_0683 0.43 +0.3 777,954 + Shew_0683 0.50 -0.1 778,061 - Shew_0683 0.60 +0.5 778,313 + Shew_0683 0.84 -0.1 778,359 + Shew_0683 0.88 +0.7 778,359 + Shew_0683 0.88 -1.4 778,388 - -0.3
Or see this region's nucleotide sequence