Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0633 and Shew_0634 are separated by 97 nucleotides Shew_0634 and Shew_0635 are separated by 233 nucleotides Shew_0635 and Shew_0636 are separated by 137 nucleotides Shew_0636 and Shew_0637 are separated by 29 nucleotides
Shew_0633: Shew_0633 - hypothetical protein (RefSeq), at 720,299 to 721,741
_0633
Shew_0634: Shew_0634 - hypothetical protein (RefSeq), at 721,839 to 722,240
_0634
Shew_0635: Shew_0635 - hypothetical protein (RefSeq), at 722,474 to 723,169
_0635
Shew_0636: Shew_0636 - hypothetical protein (RefSeq), at 723,307 to 723,765
_0636
Shew_0637: Shew_0637 - hypothetical protein (RefSeq), at 723,795 to 724,472
_0637
Position (kb) 722
723
724 Strain fitness (log2 ratio) -2
-1
0
1
2 at 721.812 kb on - strand at 721.817 kb on + strand at 721.964 kb on - strand, within Shew_0634 at 721.969 kb on - strand, within Shew_0634 at 722.219 kb on - strand at 722.473 kb on + strand at 722.546 kb on - strand, within Shew_0635 at 722.627 kb on + strand, within Shew_0635 at 722.655 kb on - strand, within Shew_0635 at 722.655 kb on - strand, within Shew_0635 at 722.920 kb on + strand, within Shew_0635 at 723.496 kb on - strand, within Shew_0636 at 723.649 kb on + strand, within Shew_0636 at 723.662 kb on - strand, within Shew_0636 at 723.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 721,812 - +0.4 721,817 + -0.9 721,964 - Shew_0634 0.31 -0.7 721,969 - Shew_0634 0.32 -0.1 722,219 - +0.1 722,473 + -0.7 722,546 - Shew_0635 0.10 +0.6 722,627 + Shew_0635 0.22 -2.2 722,655 - Shew_0635 0.26 -0.1 722,655 - Shew_0635 0.26 +1.4 722,920 + Shew_0635 0.64 -1.4 723,496 - Shew_0636 0.41 +2.2 723,649 + Shew_0636 0.75 +0.6 723,662 - Shew_0636 0.77 -1.2 723,755 + -0.2
Or see this region's nucleotide sequence