Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0602 and Shew_0603 are separated by 24 nucleotides Shew_0603 and Shew_0604 are separated by 173 nucleotides Shew_0604 and Shew_0605 are separated by 263 nucleotides Shew_0605 and Shew_0606 are separated by 84 nucleotides
Shew_0602: Shew_0602 - methyltransferase type 12 (RefSeq), at 681,505 to 682,158
_0602
Shew_0603: Shew_0603 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 682,183 to 682,602
_0603
Shew_0604: Shew_0604 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 682,776 to 684,251
_0604
Shew_0605: Shew_0605 - hypothetical protein (RefSeq), at 684,515 to 684,850
_0605
Shew_0606: Shew_0606 - polysulphide reductase, NrfD (RefSeq), at 684,935 to 685,876
_0606
Position (kb) 682
683
684
685 Strain fitness (log2 ratio) -2
-1
0
1
2 at 681.793 kb on + strand, within Shew_0602 at 681.950 kb on - strand, within Shew_0602 at 681.999 kb on - strand, within Shew_0602 at 682.135 kb on - strand at 682.140 kb on - strand at 682.229 kb on + strand, within Shew_0603 at 682.309 kb on + strand, within Shew_0603 at 682.318 kb on + strand, within Shew_0603 at 682.813 kb on - strand at 682.938 kb on + strand, within Shew_0604 at 682.946 kb on - strand, within Shew_0604 at 682.990 kb on - strand, within Shew_0604 at 683.068 kb on + strand, within Shew_0604 at 683.107 kb on - strand, within Shew_0604 at 683.785 kb on + strand, within Shew_0604 at 683.813 kb on - strand, within Shew_0604 at 684.162 kb on - strand at 684.955 kb on - strand at 685.228 kb on + strand, within Shew_0606 at 685.228 kb on + strand, within Shew_0606 at 685.236 kb on - strand, within Shew_0606
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 681,793 + Shew_0602 0.44 -0.5 681,950 - Shew_0602 0.68 +0.5 681,999 - Shew_0602 0.76 -0.0 682,135 - +0.1 682,140 - -1.5 682,229 + Shew_0603 0.11 +0.0 682,309 + Shew_0603 0.30 +0.1 682,318 + Shew_0603 0.32 +0.6 682,813 - +0.3 682,938 + Shew_0604 0.11 -2.6 682,946 - Shew_0604 0.12 -1.2 682,990 - Shew_0604 0.14 +0.1 683,068 + Shew_0604 0.20 +2.1 683,107 - Shew_0604 0.22 -1.7 683,785 + Shew_0604 0.68 -0.2 683,813 - Shew_0604 0.70 +1.4 684,162 - +0.6 684,955 - -0.6 685,228 + Shew_0606 0.31 -1.2 685,228 + Shew_0606 0.31 -0.5 685,236 - Shew_0606 0.32 +0.2
Or see this region's nucleotide sequence