Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0457 and Shew_0458 are separated by 365 nucleotides Shew_0458 and Shew_0459 are separated by 240 nucleotides
Shew_0457: Shew_0457 - ATP-dependent helicase HepA (RefSeq), at 507,362 to 510,268
_0457
Shew_0458: Shew_0458 - PhoH family protein (RefSeq), at 510,634 to 512,028
_0458
Shew_0459: Shew_0459 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 512,269 to 515,961
_0459
Position (kb) 510
511
512
513 Strain fitness (log2 ratio) -1
0
1
2 at 509.721 kb on + strand, within Shew_0457 at 509.768 kb on + strand, within Shew_0457 at 509.787 kb on - strand, within Shew_0457 at 509.828 kb on + strand, within Shew_0457 at 509.842 kb on + strand, within Shew_0457 at 509.985 kb on - strand at 510.243 kb on - strand at 510.623 kb on - strand at 510.740 kb on - strand at 510.740 kb on - strand at 510.848 kb on - strand, within Shew_0458 at 510.987 kb on + strand, within Shew_0458 at 510.995 kb on - strand, within Shew_0458 at 511.065 kb on + strand, within Shew_0458 at 511.310 kb on + strand, within Shew_0458 at 511.310 kb on + strand, within Shew_0458 at 511.409 kb on - strand, within Shew_0458 at 511.521 kb on - strand, within Shew_0458 at 511.663 kb on - strand, within Shew_0458 at 511.663 kb on + strand, within Shew_0458 at 511.850 kb on + strand, within Shew_0458 at 511.860 kb on + strand, within Shew_0458 at 511.913 kb on + strand at 511.921 kb on - strand at 511.923 kb on + strand at 511.931 kb on - strand at 512.133 kb on - strand at 512.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 509,721 + Shew_0457 0.81 +0.1 509,768 + Shew_0457 0.83 -1.1 509,787 - Shew_0457 0.83 -0.4 509,828 + Shew_0457 0.85 -0.0 509,842 + Shew_0457 0.85 +2.3 509,985 - +1.6 510,243 - -0.2 510,623 - -0.3 510,740 - -0.7 510,740 - -0.9 510,848 - Shew_0458 0.15 +0.4 510,987 + Shew_0458 0.25 -0.9 510,995 - Shew_0458 0.26 -0.6 511,065 + Shew_0458 0.31 +0.5 511,310 + Shew_0458 0.48 -0.6 511,310 + Shew_0458 0.48 +0.0 511,409 - Shew_0458 0.56 -0.7 511,521 - Shew_0458 0.64 +0.4 511,663 - Shew_0458 0.74 +0.5 511,663 + Shew_0458 0.74 +1.6 511,850 + Shew_0458 0.87 +0.4 511,860 + Shew_0458 0.88 -0.2 511,913 + +0.9 511,921 - +0.3 511,923 + +0.4 511,931 - +1.0 512,133 - -0.7 512,140 - +0.5
Or see this region's nucleotide sequence