Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0414 and Shew_0415 are separated by 36 nucleotides Shew_0415 and Shew_0416 are separated by 146 nucleotides Shew_0416 and Shew_0417 are separated by 168 nucleotides Shew_0417 and Shew_0418 are separated by 3 nucleotides
Shew_0414: Shew_0414 - ABC-2 type transporter (RefSeq), at 468,027 to 469,172
_0414
Shew_0415: Shew_0415 - hypothetical protein (RefSeq), at 469,209 to 469,751
_0415
Shew_0416: Shew_0416 - peptidase U62, modulator of DNA gyrase (RefSeq), at 469,898 to 471,238
_0416
Shew_0417: Shew_0417 - ArsR family transcriptional regulator (RefSeq), at 471,407 to 471,754
_0417
Shew_0418: Shew_0418 - arsenical-resistance protein (RefSeq), at 471,758 to 472,792
_0418
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -2
-1
0
1 at 469.364 kb on - strand, within Shew_0415 at 469.515 kb on - strand, within Shew_0415 at 469.560 kb on - strand, within Shew_0415 at 469.715 kb on + strand at 469.724 kb on + strand at 469.732 kb on - strand at 470.142 kb on - strand, within Shew_0416 at 470.271 kb on - strand, within Shew_0416 at 470.773 kb on + strand, within Shew_0416 at 470.900 kb on - strand, within Shew_0416 at 470.983 kb on + strand, within Shew_0416 at 470.996 kb on - strand, within Shew_0416 at 471.091 kb on + strand, within Shew_0416 at 471.091 kb on + strand, within Shew_0416 at 471.099 kb on - strand, within Shew_0416 at 471.104 kb on + strand, within Shew_0416 at 471.314 kb on - strand at 471.431 kb on - strand at 471.437 kb on + strand at 471.466 kb on + strand, within Shew_0417 at 471.623 kb on - strand, within Shew_0417 at 471.677 kb on - strand, within Shew_0417 at 472.188 kb on + strand, within Shew_0418 at 472.196 kb on - strand, within Shew_0418 at 472.196 kb on - strand, within Shew_0418
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 469,364 - Shew_0415 0.29 +0.3 469,515 - Shew_0415 0.56 -0.5 469,560 - Shew_0415 0.65 +0.0 469,715 + +1.1 469,724 + +0.6 469,732 - -0.3 470,142 - Shew_0416 0.18 +1.0 470,271 - Shew_0416 0.28 +0.2 470,773 + Shew_0416 0.65 +0.5 470,900 - Shew_0416 0.75 +0.7 470,983 + Shew_0416 0.81 -0.7 470,996 - Shew_0416 0.82 +1.1 471,091 + Shew_0416 0.89 +1.1 471,091 + Shew_0416 0.89 +1.0 471,099 - Shew_0416 0.90 +0.8 471,104 + Shew_0416 0.90 +0.8 471,314 - -1.3 471,431 - -1.8 471,437 + -0.3 471,466 + Shew_0417 0.17 +0.1 471,623 - Shew_0417 0.62 +0.3 471,677 - Shew_0417 0.78 -0.7 472,188 + Shew_0418 0.42 -0.7 472,196 - Shew_0418 0.42 -0.1 472,196 - Shew_0418 0.42 -0.0
Or see this region's nucleotide sequence