Strain Fitness in Shewanella loihica PV-4 around Shew_0317

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0316 and Shew_0317 are separated by 55 nucleotidesShew_0317 and hemC are separated by 2 nucleotides Shew_0316: Shew_0316 - protein of unknown function DUF513, hemX (RefSeq), at 361,731 to 362,873 _0316 Shew_0317: Shew_0317 - uroporphyrinogen III synthase HEM4 (RefSeq), at 362,929 to 363,660 _0317 Shew_0318: hemC - porphobilinogen deaminase (RefSeq), at 363,663 to 364,616 hemC Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1at 361.962 kb on - strand, within Shew_0316at 362.185 kb on - strand, within Shew_0316at 362.185 kb on - strand, within Shew_0316at 362.234 kb on - strand, within Shew_0316at 362.452 kb on + strand, within Shew_0316at 362.558 kb on + strand, within Shew_0316at 362.884 kb on + strandat 362.949 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
361,962 - Shew_0316 0.20 -0.5
362,185 - Shew_0316 0.40 +1.0
362,185 - Shew_0316 0.40 -0.5
362,234 - Shew_0316 0.44 -2.4
362,452 + Shew_0316 0.63 -0.4
362,558 + Shew_0316 0.72 +0.3
362,884 + +1.0
362,949 - -0.4

Or see this region's nucleotide sequence