Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0243 and Shew_0244 are separated by 548 nucleotides Shew_0244 and Shew_0245 are separated by 9 nucleotides
Shew_0243: Shew_0243 - LysR family transcriptional regulator (RefSeq), at 260,264 to 261,229
_0243
Shew_0244: Shew_0244 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 261,778 to 262,473
_0244
Shew_0245: Shew_0245 - molydopterin dinucleotide-binding region (RefSeq), at 262,483 to 265,521
_0245
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2 at 260.893 kb on + strand, within Shew_0243 at 260.953 kb on + strand, within Shew_0243 at 260.962 kb on - strand, within Shew_0243 at 260.998 kb on + strand, within Shew_0243 at 261.022 kb on + strand, within Shew_0243 at 261.038 kb on - strand, within Shew_0243 at 261.057 kb on - strand, within Shew_0243 at 261.077 kb on + strand, within Shew_0243 at 261.098 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.100 kb on + strand, within Shew_0243 at 261.106 kb on + strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.108 kb on - strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.113 kb on + strand, within Shew_0243 at 261.120 kb on + strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.121 kb on - strand, within Shew_0243 at 261.127 kb on + strand, within Shew_0243 at 261.127 kb on + strand, within Shew_0243 at 261.127 kb on + strand, within Shew_0243 at 261.128 kb on - strand, within Shew_0243 at 261.128 kb on - strand, within Shew_0243 at 261.128 kb on - strand, within Shew_0243 at 261.128 kb on - strand, within Shew_0243 at 261.128 kb on - strand, within Shew_0243 at 261.129 kb on + strand, within Shew_0243 at 261.135 kb on - strand at 261.135 kb on - strand at 261.135 kb on - strand at 261.142 kb on - strand at 261.147 kb on - strand at 261.147 kb on - strand at 261.147 kb on - strand at 261.151 kb on + strand at 261.151 kb on + strand at 261.151 kb on + strand at 261.153 kb on + strand at 261.158 kb on + strand at 261.159 kb on - strand at 261.159 kb on + strand at 261.159 kb on - strand at 261.159 kb on - strand at 261.166 kb on - strand at 261.172 kb on + strand at 261.177 kb on - strand at 261.180 kb on + strand at 261.188 kb on - strand at 261.188 kb on - strand at 261.190 kb on - strand at 261.190 kb on + strand at 261.204 kb on + strand at 261.214 kb on + strand at 261.227 kb on - strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.231 kb on + strand at 261.239 kb on - strand at 261.239 kb on - strand at 261.239 kb on - strand at 261.241 kb on + strand at 261.284 kb on - strand at 261.402 kb on - strand at 261.403 kb on - strand at 261.404 kb on + strand at 261.418 kb on - strand at 261.426 kb on - strand at 261.441 kb on - strand at 261.443 kb on + strand at 261.443 kb on + strand at 261.443 kb on + strand at 261.444 kb on + strand at 261.444 kb on + strand at 261.444 kb on + strand at 261.445 kb on + strand at 261.450 kb on + strand at 261.450 kb on + strand at 261.451 kb on - strand at 261.452 kb on - strand at 261.456 kb on + strand at 261.456 kb on + strand at 261.457 kb on - strand at 261.457 kb on - strand at 261.458 kb on - strand at 261.458 kb on - strand at 261.458 kb on - strand at 261.458 kb on - strand at 261.471 kb on + strand at 261.477 kb on + strand at 261.494 kb on + strand at 261.502 kb on - strand at 261.504 kb on - strand at 261.588 kb on + strand at 261.670 kb on + strand at 261.670 kb on + strand at 261.670 kb on + strand at 261.670 kb on + strand at 261.774 kb on + strand at 261.780 kb on - strand at 261.786 kb on - strand at 261.786 kb on - strand at 261.823 kb on - strand at 261.825 kb on + strand at 261.825 kb on + strand at 261.825 kb on + strand at 261.825 kb on + strand at 261.828 kb on - strand at 261.828 kb on - strand at 261.833 kb on - strand at 261.833 kb on - strand at 261.842 kb on - strand at 261.850 kb on - strand, within Shew_0244 at 261.863 kb on + strand, within Shew_0244 at 261.871 kb on - strand, within Shew_0244 at 261.878 kb on + strand, within Shew_0244 at 261.880 kb on + strand, within Shew_0244 at 261.888 kb on + strand, within Shew_0244 at 261.893 kb on + strand, within Shew_0244 at 261.894 kb on - strand, within Shew_0244 at 261.992 kb on + strand, within Shew_0244 at 262.006 kb on - strand, within Shew_0244 at 262.037 kb on + strand, within Shew_0244 at 262.079 kb on - strand, within Shew_0244 at 262.084 kb on - strand, within Shew_0244 at 262.084 kb on - strand, within Shew_0244 at 262.098 kb on - strand, within Shew_0244 at 262.112 kb on + strand, within Shew_0244 at 262.247 kb on + strand, within Shew_0244 at 262.255 kb on - strand, within Shew_0244 at 262.356 kb on + strand, within Shew_0244 at 262.364 kb on - strand, within Shew_0244 at 262.429 kb on + strand at 262.723 kb on - strand at 262.951 kb on + strand, within Shew_0245 at 262.993 kb on - strand, within Shew_0245 at 263.142 kb on - strand, within Shew_0245 at 263.144 kb on - strand, within Shew_0245 at 263.190 kb on + strand, within Shew_0245 at 263.201 kb on + strand, within Shew_0245 at 263.259 kb on - strand, within Shew_0245 at 263.336 kb on - strand, within Shew_0245 at 263.362 kb on + strand, within Shew_0245 at 263.396 kb on + strand, within Shew_0245
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 260,893 + Shew_0243 0.65 -0.7 260,953 + Shew_0243 0.71 +0.1 260,962 - Shew_0243 0.72 -0.0 260,998 + Shew_0243 0.76 +0.6 261,022 + Shew_0243 0.78 +0.7 261,038 - Shew_0243 0.80 -0.0 261,057 - Shew_0243 0.82 -0.9 261,077 + Shew_0243 0.84 -0.4 261,098 + Shew_0243 0.86 +0.6 261,100 + Shew_0243 0.87 -0.1 261,100 + Shew_0243 0.87 +0.5 261,100 + Shew_0243 0.87 -1.3 261,100 + Shew_0243 0.87 -1.5 261,100 + Shew_0243 0.87 -0.4 261,100 + Shew_0243 0.87 -0.3 261,100 + Shew_0243 0.87 +1.0 261,100 + Shew_0243 0.87 -0.3 261,100 + Shew_0243 0.87 +0.3 261,100 + Shew_0243 0.87 +0.5 261,106 + Shew_0243 0.87 +0.5 261,108 - Shew_0243 0.87 +0.1 261,108 - Shew_0243 0.87 -0.5 261,108 - Shew_0243 0.87 -0.5 261,108 - Shew_0243 0.87 +0.3 261,108 - Shew_0243 0.87 -0.1 261,108 - Shew_0243 0.87 +0.8 261,108 - Shew_0243 0.87 -1.5 261,108 - Shew_0243 0.87 +0.6 261,108 - Shew_0243 0.87 -1.8 261,108 - Shew_0243 0.87 +1.4 261,108 - Shew_0243 0.87 -1.8 261,113 + Shew_0243 0.88 +0.3 261,113 + Shew_0243 0.88 +0.9 261,113 + Shew_0243 0.88 -0.4 261,113 + Shew_0243 0.88 -1.0 261,113 + Shew_0243 0.88 +0.1 261,113 + Shew_0243 0.88 +0.2 261,113 + Shew_0243 0.88 -0.0 261,113 + Shew_0243 0.88 +0.6 261,113 + Shew_0243 0.88 +0.1 261,113 + Shew_0243 0.88 -0.5 261,113 + Shew_0243 0.88 +0.2 261,113 + Shew_0243 0.88 +1.2 261,113 + Shew_0243 0.88 -0.2 261,113 + Shew_0243 0.88 +0.5 261,120 + Shew_0243 0.89 +0.3 261,121 - Shew_0243 0.89 +1.2 261,121 - Shew_0243 0.89 -1.0 261,121 - Shew_0243 0.89 +0.2 261,121 - Shew_0243 0.89 -0.1 261,121 - Shew_0243 0.89 +1.7 261,121 - Shew_0243 0.89 -1.8 261,121 - Shew_0243 0.89 -2.0 261,121 - Shew_0243 0.89 +0.7 261,121 - Shew_0243 0.89 -0.2 261,121 - Shew_0243 0.89 +0.2 261,121 - Shew_0243 0.89 +0.2 261,121 - Shew_0243 0.89 -0.3 261,121 - Shew_0243 0.89 -2.1 261,121 - Shew_0243 0.89 +0.1 261,121 - Shew_0243 0.89 -0.4 261,121 - Shew_0243 0.89 +0.1 261,121 - Shew_0243 0.89 -0.1 261,121 - Shew_0243 0.89 +0.2 261,121 - Shew_0243 0.89 +0.4 261,121 - Shew_0243 0.89 +0.2 261,121 - Shew_0243 0.89 +2.1 261,121 - Shew_0243 0.89 +0.3 261,121 - Shew_0243 0.89 +1.2 261,121 - Shew_0243 0.89 +0.1 261,121 - Shew_0243 0.89 +0.0 261,121 - Shew_0243 0.89 -0.2 261,121 - Shew_0243 0.89 -0.4 261,127 + Shew_0243 0.89 -0.1 261,127 + Shew_0243 0.89 +0.9 261,127 + Shew_0243 0.89 -1.3 261,128 - Shew_0243 0.89 +1.3 261,128 - Shew_0243 0.89 +1.7 261,128 - Shew_0243 0.89 +0.4 261,128 - Shew_0243 0.89 +0.9 261,128 - Shew_0243 0.89 +0.4 261,129 + Shew_0243 0.90 +0.2 261,135 - +0.9 261,135 - -0.1 261,135 - -1.5 261,142 - +2.0 261,147 - +0.6 261,147 - +0.5 261,147 - +0.2 261,151 + +0.0 261,151 + -2.2 261,151 + +0.4 261,153 + +0.7 261,158 + +1.0 261,159 - -0.2 261,159 + +0.2 261,159 - +0.5 261,159 - +0.1 261,166 - +0.3 261,172 + +0.2 261,177 - -0.2 261,180 + +0.7 261,188 - -0.2 261,188 - +0.1 261,190 - -0.1 261,190 + +0.1 261,204 + +0.7 261,214 + -0.3 261,227 - -0.1 261,231 + -0.4 261,231 + +0.5 261,231 + -0.4 261,231 + +0.3 261,231 + +1.8 261,231 + +1.5 261,231 + +0.2 261,239 - +1.2 261,239 - +0.3 261,239 - -0.4 261,241 + +1.7 261,284 - +0.3 261,402 - -1.4 261,403 - +0.7 261,404 + +0.9 261,418 - +0.9 261,426 - -0.1 261,441 - +0.4 261,443 + +0.1 261,443 + +0.5 261,443 + +0.4 261,444 + +1.5 261,444 + -0.3 261,444 + +0.1 261,445 + +2.7 261,450 + +1.0 261,450 + +1.4 261,451 - +0.4 261,452 - +0.4 261,456 + +0.6 261,456 + +0.5 261,457 - +0.7 261,457 - +0.3 261,458 - +0.5 261,458 - +0.7 261,458 - +0.7 261,458 - -0.0 261,471 + -0.9 261,477 + -0.1 261,494 + +0.6 261,502 - +1.5 261,504 - +1.1 261,588 + +0.4 261,670 + -0.5 261,670 + +1.1 261,670 + +0.0 261,670 + +0.0 261,774 + +0.4 261,780 - +0.1 261,786 - -1.4 261,786 - +0.2 261,823 - +0.1 261,825 + -2.1 261,825 + +0.1 261,825 + +0.1 261,825 + -0.1 261,828 - -0.0 261,828 - +0.3 261,833 - +0.1 261,833 - +0.4 261,842 - +0.2 261,850 - Shew_0244 0.10 -0.0 261,863 + Shew_0244 0.12 -2.6 261,871 - Shew_0244 0.13 -0.1 261,878 + Shew_0244 0.14 +0.4 261,880 + Shew_0244 0.15 -0.1 261,888 + Shew_0244 0.16 +1.5 261,893 + Shew_0244 0.17 +0.5 261,894 - Shew_0244 0.17 -0.0 261,992 + Shew_0244 0.31 +0.4 262,006 - Shew_0244 0.33 +0.7 262,037 + Shew_0244 0.37 +0.4 262,079 - Shew_0244 0.43 -0.0 262,084 - Shew_0244 0.44 -1.7 262,084 - Shew_0244 0.44 +0.4 262,098 - Shew_0244 0.46 +0.3 262,112 + Shew_0244 0.48 +1.7 262,247 + Shew_0244 0.67 -1.2 262,255 - Shew_0244 0.69 -0.0 262,356 + Shew_0244 0.83 +0.6 262,364 - Shew_0244 0.84 -0.1 262,429 + +0.1 262,723 - -0.9 262,951 + Shew_0245 0.15 -0.5 262,993 - Shew_0245 0.17 -0.3 263,142 - Shew_0245 0.22 +0.4 263,144 - Shew_0245 0.22 -2.0 263,190 + Shew_0245 0.23 +0.2 263,201 + Shew_0245 0.24 -0.3 263,259 - Shew_0245 0.26 +0.7 263,336 - Shew_0245 0.28 -0.5 263,362 + Shew_0245 0.29 +0.5 263,396 + Shew_0245 0.30 +0.9
Or see this region's nucleotide sequence