Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_995

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_994 and Pf6N2E2_995 are separated by 100 nucleotidesPf6N2E2_995 and Pf6N2E2_996 are separated by 85 nucleotidesPf6N2E2_996 and Pf6N2E2_997 are separated by 79 nucleotides Pf6N2E2_994 - NADH-dependent dehydrogenase, at 1,163,506 to 1,164,594 _994 Pf6N2E2_995 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,164,695 to 1,165,498 _995 Pf6N2E2_996 - Stress responsive alpha-beta barrel domain protein Dabb, at 1,165,584 to 1,165,889 _996 Pf6N2E2_997 - Catechol 1,2-dioxygenase 1 (EC 1.13.11.1), at 1,165,969 to 1,166,697 _997 Position (kb) 1164 1165 1166Strain fitness (log2 ratio) -2 -1 0 1 2at 1163.717 kb on - strand, within Pf6N2E2_994at 1163.717 kb on - strand, within Pf6N2E2_994at 1163.717 kb on - strand, within Pf6N2E2_994at 1163.792 kb on + strand, within Pf6N2E2_994at 1163.792 kb on + strand, within Pf6N2E2_994at 1163.793 kb on - strand, within Pf6N2E2_994at 1163.837 kb on + strand, within Pf6N2E2_994at 1163.837 kb on + strand, within Pf6N2E2_994at 1163.916 kb on - strand, within Pf6N2E2_994at 1163.955 kb on + strand, within Pf6N2E2_994at 1163.956 kb on - strand, within Pf6N2E2_994at 1164.007 kb on - strand, within Pf6N2E2_994at 1164.049 kb on + strand, within Pf6N2E2_994at 1164.049 kb on + strand, within Pf6N2E2_994at 1164.049 kb on + strand, within Pf6N2E2_994at 1164.053 kb on + strand, within Pf6N2E2_994at 1164.054 kb on - strand, within Pf6N2E2_994at 1164.054 kb on - strand, within Pf6N2E2_994at 1164.054 kb on - strand, within Pf6N2E2_994at 1164.142 kb on + strand, within Pf6N2E2_994at 1164.142 kb on + strand, within Pf6N2E2_994at 1164.142 kb on + strand, within Pf6N2E2_994at 1164.312 kb on + strand, within Pf6N2E2_994at 1164.313 kb on - strand, within Pf6N2E2_994at 1164.354 kb on - strand, within Pf6N2E2_994at 1164.382 kb on + strand, within Pf6N2E2_994at 1164.382 kb on + strand, within Pf6N2E2_994at 1164.382 kb on + strand, within Pf6N2E2_994at 1164.382 kb on + strand, within Pf6N2E2_994at 1164.382 kb on + strand, within Pf6N2E2_994at 1164.383 kb on - strand, within Pf6N2E2_994at 1164.383 kb on - strand, within Pf6N2E2_994at 1164.383 kb on - strand, within Pf6N2E2_994at 1164.383 kb on - strand, within Pf6N2E2_994at 1164.487 kb on + strandat 1164.487 kb on + strandat 1164.514 kb on + strandat 1164.588 kb on + strandat 1164.623 kb on - strandat 1164.698 kb on + strandat 1164.698 kb on + strandat 1164.698 kb on + strandat 1164.698 kb on + strandat 1164.699 kb on - strandat 1164.699 kb on - strandat 1164.699 kb on - strandat 1164.780 kb on - strand, within Pf6N2E2_995at 1164.780 kb on - strand, within Pf6N2E2_995at 1164.782 kb on + strand, within Pf6N2E2_995at 1164.782 kb on + strand, within Pf6N2E2_995at 1164.782 kb on + strand, within Pf6N2E2_995at 1164.782 kb on + strand, within Pf6N2E2_995at 1164.782 kb on + strand, within Pf6N2E2_995at 1164.782 kb on + strand, within Pf6N2E2_995at 1164.782 kb on + strand, within Pf6N2E2_995at 1164.783 kb on - strand, within Pf6N2E2_995at 1164.783 kb on - strand, within Pf6N2E2_995at 1164.783 kb on - strand, within Pf6N2E2_995at 1164.783 kb on - strand, within Pf6N2E2_995at 1164.783 kb on - strand, within Pf6N2E2_995at 1164.817 kb on + strand, within Pf6N2E2_995at 1164.834 kb on - strand, within Pf6N2E2_995at 1164.935 kb on - strand, within Pf6N2E2_995at 1165.018 kb on + strand, within Pf6N2E2_995at 1165.018 kb on + strand, within Pf6N2E2_995at 1165.019 kb on - strand, within Pf6N2E2_995at 1165.019 kb on - strand, within Pf6N2E2_995at 1165.029 kb on + strand, within Pf6N2E2_995at 1165.030 kb on - strand, within Pf6N2E2_995at 1165.030 kb on - strandat 1165.140 kb on + strand, within Pf6N2E2_995at 1165.140 kb on + strand, within Pf6N2E2_995at 1165.140 kb on + strand, within Pf6N2E2_995at 1165.140 kb on + strand, within Pf6N2E2_995at 1165.140 kb on + strand, within Pf6N2E2_995at 1165.140 kb on + strand, within Pf6N2E2_995at 1165.220 kb on + strand, within Pf6N2E2_995at 1165.220 kb on + strand, within Pf6N2E2_995at 1165.220 kb on + strand, within Pf6N2E2_995at 1165.255 kb on - strand, within Pf6N2E2_995at 1165.255 kb on - strand, within Pf6N2E2_995at 1165.444 kb on + strandat 1165.445 kb on - strandat 1165.498 kb on + strandat 1165.498 kb on + strandat 1165.705 kb on + strand, within Pf6N2E2_996at 1165.872 kb on - strandat 1165.905 kb on - strandat 1165.961 kb on + strandat 1165.961 kb on + strandat 1165.961 kb on + strandat 1165.961 kb on + strandat 1165.970 kb on + strandat 1165.970 kb on + strandat 1166.006 kb on + strandat 1166.006 kb on + strandat 1166.006 kb on + strandat 1166.007 kb on - strandat 1166.009 kb on + strandat 1166.009 kb on + strandat 1166.009 kb on + strandat 1166.114 kb on + strand, within Pf6N2E2_997at 1166.146 kb on + strand, within Pf6N2E2_997at 1166.147 kb on - strand, within Pf6N2E2_997at 1166.212 kb on + strand, within Pf6N2E2_997at 1166.212 kb on + strand, within Pf6N2E2_997at 1166.259 kb on - strandat 1166.285 kb on + strand, within Pf6N2E2_997at 1166.285 kb on + strand, within Pf6N2E2_997at 1166.285 kb on + strand, within Pf6N2E2_997at 1166.285 kb on + strand, within Pf6N2E2_997at 1166.286 kb on - strand, within Pf6N2E2_997at 1166.286 kb on - strand, within Pf6N2E2_997at 1166.289 kb on - strand, within Pf6N2E2_997at 1166.311 kb on + strand, within Pf6N2E2_997at 1166.312 kb on - strand, within Pf6N2E2_997at 1166.330 kb on + strand, within Pf6N2E2_997at 1166.330 kb on + strand, within Pf6N2E2_997at 1166.330 kb on + strand, within Pf6N2E2_997at 1166.331 kb on - strand, within Pf6N2E2_997at 1166.360 kb on + strand, within Pf6N2E2_997at 1166.361 kb on - strand, within Pf6N2E2_997at 1166.361 kb on - strand, within Pf6N2E2_997

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,163,717 - Pf6N2E2_994 0.19 +0.5
1,163,717 - Pf6N2E2_994 0.19 -0.2
1,163,717 - Pf6N2E2_994 0.19 -0.4
1,163,792 + Pf6N2E2_994 0.26 -0.2
1,163,792 + Pf6N2E2_994 0.26 -0.3
1,163,793 - Pf6N2E2_994 0.26 +0.4
1,163,837 + Pf6N2E2_994 0.30 -1.4
1,163,837 + Pf6N2E2_994 0.30 +0.2
1,163,916 - Pf6N2E2_994 0.38 +0.1
1,163,955 + Pf6N2E2_994 0.41 -1.4
1,163,956 - Pf6N2E2_994 0.41 +1.1
1,164,007 - Pf6N2E2_994 0.46 -0.9
1,164,049 + Pf6N2E2_994 0.50 -0.0
1,164,049 + Pf6N2E2_994 0.50 +0.8
1,164,049 + Pf6N2E2_994 0.50 -0.5
1,164,053 + Pf6N2E2_994 0.50 -0.2
1,164,054 - Pf6N2E2_994 0.50 -1.4
1,164,054 - Pf6N2E2_994 0.50 +1.4
1,164,054 - Pf6N2E2_994 0.50 +0.3
1,164,142 + Pf6N2E2_994 0.58 +0.7
1,164,142 + Pf6N2E2_994 0.58 +0.5
1,164,142 + Pf6N2E2_994 0.58 +1.4
1,164,312 + Pf6N2E2_994 0.74 -0.2
1,164,313 - Pf6N2E2_994 0.74 +0.7
1,164,354 - Pf6N2E2_994 0.78 +0.7
1,164,382 + Pf6N2E2_994 0.80 +0.5
1,164,382 + Pf6N2E2_994 0.80 +0.2
1,164,382 + Pf6N2E2_994 0.80 +1.3
1,164,382 + Pf6N2E2_994 0.80 +0.4
1,164,382 + Pf6N2E2_994 0.80 -2.2
1,164,383 - Pf6N2E2_994 0.81 -0.8
1,164,383 - Pf6N2E2_994 0.81 +0.6
1,164,383 - Pf6N2E2_994 0.81 +0.8
1,164,383 - Pf6N2E2_994 0.81 -1.0
1,164,487 + -1.4
1,164,487 + +0.1
1,164,514 + -0.4
1,164,588 + +1.1
1,164,623 - +0.0
1,164,698 + +0.3
1,164,698 + +0.7
1,164,698 + +0.4
1,164,698 + +0.2
1,164,699 - +2.1
1,164,699 - +0.8
1,164,699 - +2.1
1,164,780 - Pf6N2E2_995 0.11 +0.4
1,164,780 - Pf6N2E2_995 0.11 +0.3
1,164,782 + Pf6N2E2_995 0.11 -0.5
1,164,782 + Pf6N2E2_995 0.11 +2.4
1,164,782 + Pf6N2E2_995 0.11 +0.2
1,164,782 + Pf6N2E2_995 0.11 +1.1
1,164,782 + Pf6N2E2_995 0.11 +1.2
1,164,782 + Pf6N2E2_995 0.11 +0.5
1,164,782 + Pf6N2E2_995 0.11 -0.5
1,164,783 - Pf6N2E2_995 0.11 -0.7
1,164,783 - Pf6N2E2_995 0.11 +1.1
1,164,783 - Pf6N2E2_995 0.11 +0.5
1,164,783 - Pf6N2E2_995 0.11 +0.5
1,164,783 - Pf6N2E2_995 0.11 +0.7
1,164,817 + Pf6N2E2_995 0.15 -0.3
1,164,834 - Pf6N2E2_995 0.17 +0.4
1,164,935 - Pf6N2E2_995 0.30 -0.6
1,165,018 + Pf6N2E2_995 0.40 +1.0
1,165,018 + Pf6N2E2_995 0.40 -0.1
1,165,019 - Pf6N2E2_995 0.40 +0.7
1,165,019 - Pf6N2E2_995 0.40 -1.2
1,165,029 + Pf6N2E2_995 0.42 -0.3
1,165,030 - Pf6N2E2_995 0.42 +0.7
1,165,030 - +2.1
1,165,140 + Pf6N2E2_995 0.55 -0.7
1,165,140 + Pf6N2E2_995 0.55 +1.5
1,165,140 + Pf6N2E2_995 0.55 -0.5
1,165,140 + Pf6N2E2_995 0.55 -1.1
1,165,140 + Pf6N2E2_995 0.55 -0.5
1,165,140 + Pf6N2E2_995 0.55 +0.9
1,165,220 + Pf6N2E2_995 0.65 +1.4
1,165,220 + Pf6N2E2_995 0.65 +0.8
1,165,220 + Pf6N2E2_995 0.65 +0.1
1,165,255 - Pf6N2E2_995 0.70 +0.5
1,165,255 - Pf6N2E2_995 0.70 -0.8
1,165,444 + +0.9
1,165,445 - +1.7
1,165,498 + +0.9
1,165,498 + -0.2
1,165,705 + Pf6N2E2_996 0.40 -1.1
1,165,872 - +1.0
1,165,905 - -1.5
1,165,961 + +0.4
1,165,961 + -0.2
1,165,961 + +0.1
1,165,961 + +0.1
1,165,970 + -0.0
1,165,970 + +0.7
1,166,006 + +0.8
1,166,006 + +0.7
1,166,006 + -1.0
1,166,007 - -0.2
1,166,009 + +0.8
1,166,009 + -1.1
1,166,009 + -0.3
1,166,114 + Pf6N2E2_997 0.20 +0.3
1,166,146 + Pf6N2E2_997 0.24 -0.4
1,166,147 - Pf6N2E2_997 0.24 -1.1
1,166,212 + Pf6N2E2_997 0.33 -1.6
1,166,212 + Pf6N2E2_997 0.33 +0.9
1,166,259 - +2.7
1,166,285 + Pf6N2E2_997 0.43 +0.5
1,166,285 + Pf6N2E2_997 0.43 -0.2
1,166,285 + Pf6N2E2_997 0.43 -0.8
1,166,285 + Pf6N2E2_997 0.43 -0.0
1,166,286 - Pf6N2E2_997 0.43 -1.3
1,166,286 - Pf6N2E2_997 0.43 +1.0
1,166,289 - Pf6N2E2_997 0.44 +0.9
1,166,311 + Pf6N2E2_997 0.47 -1.2
1,166,312 - Pf6N2E2_997 0.47 +0.1
1,166,330 + Pf6N2E2_997 0.50 -0.2
1,166,330 + Pf6N2E2_997 0.50 -0.9
1,166,330 + Pf6N2E2_997 0.50 +1.1
1,166,331 - Pf6N2E2_997 0.50 -0.6
1,166,360 + Pf6N2E2_997 0.54 -1.7
1,166,361 - Pf6N2E2_997 0.54 -0.5
1,166,361 - Pf6N2E2_997 0.54 +1.1

Or see this region's nucleotide sequence