Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6038 and Pf6N2E2_6039 are separated by 776 nucleotides Pf6N2E2_6039 and Pf6N2E2_6040 are separated by 98 nucleotides Pf6N2E2_6040 and Pf6N2E2_6041 are separated by 144 nucleotides
Pf6N2E2_6038 - hypothetical protein, at 6,858,021 to 6,858,416
_6038
Pf6N2E2_6039 - Probable lipoprotein signal peptide, at 6,859,193 to 6,860,248
_6039
Pf6N2E2_6040 - hypothetical protein, at 6,860,347 to 6,861,024
_6040
Pf6N2E2_6041 - hypothetical protein, at 6,861,169 to 6,861,792
_6041
Position (kb)
6859
6860
6861 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6858.412 kb on + strand at 6858.412 kb on + strand at 6858.413 kb on - strand at 6858.413 kb on - strand at 6858.413 kb on - strand at 6858.413 kb on - strand at 6858.413 kb on - strand at 6858.446 kb on + strand at 6858.447 kb on - strand at 6858.453 kb on + strand at 6858.453 kb on + strand at 6858.453 kb on + strand at 6858.453 kb on + strand at 6858.454 kb on - strand at 6858.457 kb on + strand at 6858.457 kb on + strand at 6858.457 kb on + strand at 6858.457 kb on + strand at 6858.458 kb on - strand at 6858.458 kb on - strand at 6858.458 kb on - strand at 6858.458 kb on - strand at 6858.458 kb on - strand at 6858.469 kb on + strand at 6858.469 kb on + strand at 6858.469 kb on + strand at 6858.470 kb on - strand at 6858.485 kb on + strand at 6858.486 kb on - strand at 6858.510 kb on + strand at 6858.510 kb on + strand at 6858.511 kb on - strand at 6858.721 kb on - strand at 6858.763 kb on + strand at 6858.959 kb on - strand at 6858.959 kb on - strand at 6858.968 kb on + strand at 6859.068 kb on + strand at 6859.068 kb on + strand at 6859.069 kb on - strand at 6859.069 kb on - strand at 6859.069 kb on - strand at 6859.098 kb on - strand at 6859.184 kb on + strand at 6859.184 kb on + strand at 6859.185 kb on - strand at 6859.185 kb on - strand at 6859.357 kb on + strand, within Pf6N2E2_6039 at 6859.357 kb on + strand, within Pf6N2E2_6039 at 6859.357 kb on + strand, within Pf6N2E2_6039 at 6859.357 kb on + strand, within Pf6N2E2_6039 at 6859.358 kb on - strand, within Pf6N2E2_6039 at 6859.650 kb on + strand, within Pf6N2E2_6039 at 6859.859 kb on + strand, within Pf6N2E2_6039 at 6859.860 kb on - strand, within Pf6N2E2_6039 at 6859.860 kb on - strand, within Pf6N2E2_6039 at 6859.929 kb on + strand, within Pf6N2E2_6039 at 6859.929 kb on + strand, within Pf6N2E2_6039 at 6859.930 kb on - strand, within Pf6N2E2_6039 at 6859.930 kb on - strand, within Pf6N2E2_6039 at 6859.930 kb on - strand, within Pf6N2E2_6039 at 6859.930 kb on - strand, within Pf6N2E2_6039 at 6859.930 kb on - strand, within Pf6N2E2_6039 at 6860.268 kb on - strand at 6860.298 kb on + strand at 6860.299 kb on - strand at 6860.348 kb on + strand at 6860.348 kb on + strand at 6860.348 kb on + strand at 6860.349 kb on - strand at 6860.456 kb on + strand, within Pf6N2E2_6040 at 6860.456 kb on + strand, within Pf6N2E2_6040 at 6860.457 kb on - strand, within Pf6N2E2_6040 at 6860.457 kb on - strand, within Pf6N2E2_6040 at 6860.564 kb on - strand, within Pf6N2E2_6040 at 6860.661 kb on - strand, within Pf6N2E2_6040 at 6860.818 kb on + strand, within Pf6N2E2_6040 at 6860.827 kb on + strand, within Pf6N2E2_6040 at 6861.055 kb on + strand at 6861.055 kb on + strand at 6861.055 kb on + strand at 6861.056 kb on - strand at 6861.063 kb on - strand at 6861.092 kb on - strand at 6861.132 kb on + strand at 6861.132 kb on + strand at 6861.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 6,858,412 + -0.7 6,858,412 + -0.6 6,858,413 - +1.0 6,858,413 - -0.1 6,858,413 - +1.4 6,858,413 - +0.8 6,858,413 - +0.3 6,858,446 + +1.2 6,858,447 - -0.6 6,858,453 + -0.5 6,858,453 + +0.4 6,858,453 + -0.1 6,858,453 + +0.6 6,858,454 - -1.0 6,858,457 + -0.4 6,858,457 + +0.1 6,858,457 + -2.7 6,858,457 + +0.7 6,858,458 - +0.8 6,858,458 - +0.2 6,858,458 - -0.3 6,858,458 - +0.9 6,858,458 - -0.8 6,858,469 + +0.9 6,858,469 + +1.4 6,858,469 + +0.5 6,858,470 - +0.2 6,858,485 + -0.6 6,858,486 - -0.6 6,858,510 + +1.1 6,858,510 + -0.9 6,858,511 - +1.5 6,858,721 - +0.5 6,858,763 + -0.2 6,858,959 - +1.7 6,858,959 - +0.8 6,858,968 + -0.5 6,859,068 + +0.2 6,859,068 + +1.4 6,859,069 - -0.1 6,859,069 - -0.6 6,859,069 - -0.5 6,859,098 - +1.6 6,859,184 + +1.1 6,859,184 + -0.8 6,859,185 - +0.2 6,859,185 - +0.7 6,859,357 + Pf6N2E2_6039 0.16 +0.0 6,859,357 + Pf6N2E2_6039 0.16 -1.8 6,859,357 + Pf6N2E2_6039 0.16 -1.1 6,859,357 + Pf6N2E2_6039 0.16 -0.2 6,859,358 - Pf6N2E2_6039 0.16 +1.5 6,859,650 + Pf6N2E2_6039 0.43 -0.2 6,859,859 + Pf6N2E2_6039 0.63 -1.4 6,859,860 - Pf6N2E2_6039 0.63 +0.5 6,859,860 - Pf6N2E2_6039 0.63 -0.1 6,859,929 + Pf6N2E2_6039 0.70 +0.9 6,859,929 + Pf6N2E2_6039 0.70 +2.1 6,859,930 - Pf6N2E2_6039 0.70 +1.1 6,859,930 - Pf6N2E2_6039 0.70 +1.3 6,859,930 - Pf6N2E2_6039 0.70 -0.2 6,859,930 - Pf6N2E2_6039 0.70 +1.4 6,859,930 - Pf6N2E2_6039 0.70 -0.5 6,860,268 - +0.5 6,860,298 + -0.1 6,860,299 - -0.7 6,860,348 + -0.1 6,860,348 + +0.6 6,860,348 + -0.8 6,860,349 - +1.5 6,860,456 + Pf6N2E2_6040 0.16 +1.9 6,860,456 + Pf6N2E2_6040 0.16 -0.6 6,860,457 - Pf6N2E2_6040 0.16 -1.3 6,860,457 - Pf6N2E2_6040 0.16 +0.0 6,860,564 - Pf6N2E2_6040 0.32 -0.3 6,860,661 - Pf6N2E2_6040 0.46 +1.1 6,860,818 + Pf6N2E2_6040 0.69 -2.3 6,860,827 + Pf6N2E2_6040 0.71 +0.4 6,861,055 + +0.3 6,861,055 + -1.8 6,861,055 + +0.3 6,861,056 - -0.5 6,861,063 - +1.5 6,861,092 - -0.6 6,861,132 + +0.8 6,861,132 + +2.9 6,861,133 - -1.6
Or see this region's nucleotide sequence