Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5738

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5737 and Pf6N2E2_5738 are separated by 11 nucleotidesPf6N2E2_5738 and Pf6N2E2_5739 overlap by 4 nucleotidesPf6N2E2_5739 and Pf6N2E2_5740 overlap by 19 nucleotides Pf6N2E2_5737 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 6,554,248 to 6,554,859 _5737 Pf6N2E2_5738 - Cobyrinic acid A,C-diamide synthase, at 6,554,871 to 6,556,187 _5738 Pf6N2E2_5739 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 6,556,184 to 6,556,834 _5739 Pf6N2E2_5740 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 6,556,816 to 6,557,739 _5740 Position (kb) 6554 6555 6556 6557Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6553.901 kb on + strandat 6553.902 kb on - strandat 6553.928 kb on + strandat 6553.929 kb on - strandat 6554.055 kb on + strandat 6554.055 kb on + strandat 6554.056 kb on - strandat 6554.056 kb on - strandat 6554.056 kb on - strandat 6554.056 kb on - strandat 6554.074 kb on + strandat 6554.075 kb on - strandat 6554.075 kb on - strandat 6554.677 kb on + strand, within Pf6N2E2_5737at 6554.983 kb on + strandat 6555.054 kb on + strand, within Pf6N2E2_5738at 6555.054 kb on + strand, within Pf6N2E2_5738at 6555.055 kb on - strand, within Pf6N2E2_5738at 6555.055 kb on - strand, within Pf6N2E2_5738at 6555.624 kb on + strand, within Pf6N2E2_5738at 6555.624 kb on + strand, within Pf6N2E2_5738at 6555.625 kb on - strand, within Pf6N2E2_5738at 6555.625 kb on - strand, within Pf6N2E2_5738at 6555.625 kb on - strand, within Pf6N2E2_5738at 6555.721 kb on - strand, within Pf6N2E2_5738at 6555.839 kb on + strand, within Pf6N2E2_5738at 6555.846 kb on + strand, within Pf6N2E2_5738at 6555.846 kb on + strand, within Pf6N2E2_5738at 6555.846 kb on + strand, within Pf6N2E2_5738at 6555.847 kb on - strand, within Pf6N2E2_5738at 6555.847 kb on - strand, within Pf6N2E2_5738at 6555.847 kb on - strand, within Pf6N2E2_5738at 6555.989 kb on + strand, within Pf6N2E2_5738at 6555.989 kb on + strand, within Pf6N2E2_5738at 6555.990 kb on - strand, within Pf6N2E2_5738at 6555.993 kb on + strand, within Pf6N2E2_5738at 6555.993 kb on + strand, within Pf6N2E2_5738at 6555.993 kb on + strand, within Pf6N2E2_5738at 6555.993 kb on + strand, within Pf6N2E2_5738at 6555.993 kb on + strand, within Pf6N2E2_5738at 6555.993 kb on + strand, within Pf6N2E2_5738at 6555.994 kb on - strand, within Pf6N2E2_5738at 6555.994 kb on - strand, within Pf6N2E2_5738at 6555.994 kb on - strand, within Pf6N2E2_5738at 6555.994 kb on - strand, within Pf6N2E2_5738at 6555.994 kb on - strand, within Pf6N2E2_5738at 6556.044 kb on - strand, within Pf6N2E2_5738at 6556.104 kb on + strandat 6556.105 kb on - strandat 6556.105 kb on - strandat 6556.105 kb on - strandat 6556.105 kb on - strandat 6556.105 kb on - strandat 6556.105 kb on - strandat 6556.105 kb on - strandat 6556.226 kb on + strandat 6556.713 kb on + strand, within Pf6N2E2_5739at 6556.743 kb on - strand, within Pf6N2E2_5739at 6556.805 kb on + strandat 6556.805 kb on + strandat 6556.805 kb on + strandat 6556.805 kb on + strandat 6557.084 kb on - strand, within Pf6N2E2_5740

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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6,553,901 + +0.5
6,553,902 - -1.9
6,553,928 + -0.0
6,553,929 - -1.4
6,554,055 + +0.6
6,554,055 + +0.6
6,554,056 - +0.8
6,554,056 - +1.6
6,554,056 - +1.0
6,554,056 - +0.5
6,554,074 + +0.3
6,554,075 - -0.4
6,554,075 - -0.5
6,554,677 + Pf6N2E2_5737 0.70 +1.7
6,554,983 + +1.2
6,555,054 + Pf6N2E2_5738 0.14 +0.3
6,555,054 + Pf6N2E2_5738 0.14 +0.6
6,555,055 - Pf6N2E2_5738 0.14 +1.2
6,555,055 - Pf6N2E2_5738 0.14 +1.0
6,555,624 + Pf6N2E2_5738 0.57 +0.6
6,555,624 + Pf6N2E2_5738 0.57 +1.7
6,555,625 - Pf6N2E2_5738 0.57 +0.3
6,555,625 - Pf6N2E2_5738 0.57 -0.4
6,555,625 - Pf6N2E2_5738 0.57 +0.8
6,555,721 - Pf6N2E2_5738 0.65 -1.8
6,555,839 + Pf6N2E2_5738 0.74 +0.4
6,555,846 + Pf6N2E2_5738 0.74 +0.4
6,555,846 + Pf6N2E2_5738 0.74 -1.2
6,555,846 + Pf6N2E2_5738 0.74 +0.8
6,555,847 - Pf6N2E2_5738 0.74 -0.5
6,555,847 - Pf6N2E2_5738 0.74 +1.5
6,555,847 - Pf6N2E2_5738 0.74 +0.9
6,555,989 + Pf6N2E2_5738 0.85 -0.8
6,555,989 + Pf6N2E2_5738 0.85 +0.6
6,555,990 - Pf6N2E2_5738 0.85 +0.5
6,555,993 + Pf6N2E2_5738 0.85 +0.6
6,555,993 + Pf6N2E2_5738 0.85 +1.5
6,555,993 + Pf6N2E2_5738 0.85 +1.5
6,555,993 + Pf6N2E2_5738 0.85 -0.2
6,555,993 + Pf6N2E2_5738 0.85 +0.9
6,555,993 + Pf6N2E2_5738 0.85 +2.2
6,555,994 - Pf6N2E2_5738 0.85 +0.6
6,555,994 - Pf6N2E2_5738 0.85 +0.8
6,555,994 - Pf6N2E2_5738 0.85 +0.6
6,555,994 - Pf6N2E2_5738 0.85 +1.6
6,555,994 - Pf6N2E2_5738 0.85 -1.2
6,556,044 - Pf6N2E2_5738 0.89 -0.2
6,556,104 + +0.6
6,556,105 - +0.3
6,556,105 - +0.7
6,556,105 - +0.8
6,556,105 - +0.3
6,556,105 - -0.0
6,556,105 - -0.1
6,556,105 - +0.8
6,556,226 + +0.2
6,556,713 + Pf6N2E2_5739 0.81 +2.3
6,556,743 - Pf6N2E2_5739 0.86 +2.9
6,556,805 + +0.9
6,556,805 + -1.1
6,556,805 + -0.0
6,556,805 + -0.1
6,557,084 - Pf6N2E2_5740 0.29 +0.0

Or see this region's nucleotide sequence