Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4774

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4772 and Pf6N2E2_4773 overlap by 29 nucleotidesPf6N2E2_4773 and Pf6N2E2_4774 overlap by 4 nucleotidesPf6N2E2_4774 and Pf6N2E2_4775 are separated by 11 nucleotides Pf6N2E2_4772 - Coenzyme PQQ synthesis protein E, at 5,513,157 to 5,514,326 _4772 Pf6N2E2_4773 - Coenzyme PQQ synthesis protein D, at 5,514,298 to 5,514,573 _4773 Pf6N2E2_4774 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 5,514,570 to 5,515,322 _4774 Pf6N2E2_4775 - Coenzyme PQQ synthesis protein B, at 5,515,334 to 5,516,245 _4775 Position (kb) 5514 5515 5516Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.578 kb on + strand, within Pf6N2E2_4772at 5513.667 kb on + strand, within Pf6N2E2_4772at 5513.722 kb on + strand, within Pf6N2E2_4772at 5513.722 kb on + strand, within Pf6N2E2_4772at 5514.028 kb on + strand, within Pf6N2E2_4772at 5514.028 kb on + strand, within Pf6N2E2_4772at 5514.028 kb on + strand, within Pf6N2E2_4772at 5514.029 kb on - strand, within Pf6N2E2_4772at 5514.029 kb on - strand, within Pf6N2E2_4772at 5514.029 kb on - strand, within Pf6N2E2_4772at 5514.029 kb on - strand, within Pf6N2E2_4772at 5514.029 kb on - strand, within Pf6N2E2_4772at 5514.208 kb on + strand, within Pf6N2E2_4772at 5514.232 kb on + strandat 5514.233 kb on - strandat 5514.486 kb on - strand, within Pf6N2E2_4773at 5514.573 kb on + strandat 5514.573 kb on + strandat 5514.573 kb on + strandat 5514.573 kb on + strandat 5514.573 kb on + strandat 5514.574 kb on - strandat 5514.574 kb on - strandat 5514.574 kb on - strandat 5514.574 kb on - strandat 5514.574 kb on - strandat 5514.578 kb on + strandat 5514.578 kb on + strandat 5514.579 kb on - strandat 5514.619 kb on + strandat 5514.641 kb on - strandat 5514.733 kb on + strand, within Pf6N2E2_4774at 5514.733 kb on + strand, within Pf6N2E2_4774at 5514.734 kb on - strand, within Pf6N2E2_4774at 5514.802 kb on + strand, within Pf6N2E2_4774at 5514.802 kb on + strand, within Pf6N2E2_4774at 5514.803 kb on - strand, within Pf6N2E2_4774at 5514.803 kb on - strand, within Pf6N2E2_4774at 5514.944 kb on - strand, within Pf6N2E2_4774at 5515.158 kb on - strand, within Pf6N2E2_4774at 5515.168 kb on + strand, within Pf6N2E2_4774at 5515.168 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.225 kb on + strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.226 kb on - strand, within Pf6N2E2_4774at 5515.241 kb on - strand, within Pf6N2E2_4774at 5515.262 kb on - strandat 5515.262 kb on - strandat 5515.262 kb on - strandat 5515.262 kb on - strandat 5515.262 kb on - strandat 5515.360 kb on - strandat 5515.360 kb on - strandat 5515.439 kb on - strand, within Pf6N2E2_4775at 5515.445 kb on - strand, within Pf6N2E2_4775at 5515.445 kb on - strand, within Pf6N2E2_4775at 5515.582 kb on + strand, within Pf6N2E2_4775at 5515.582 kb on + strand, within Pf6N2E2_4775at 5515.582 kb on + strand, within Pf6N2E2_4775at 5515.659 kb on + strand, within Pf6N2E2_4775at 5515.659 kb on + strand, within Pf6N2E2_4775at 5515.659 kb on + strand, within Pf6N2E2_4775at 5515.660 kb on - strand, within Pf6N2E2_4775at 5515.660 kb on - strand, within Pf6N2E2_4775at 5515.660 kb on - strand, within Pf6N2E2_4775at 5515.660 kb on - strand, within Pf6N2E2_4775at 5515.660 kb on - strand, within Pf6N2E2_4775at 5515.660 kb on - strand, within Pf6N2E2_4775at 5515.660 kb on - strand, within Pf6N2E2_4775at 5516.228 kb on + strandat 5516.228 kb on + strandat 5516.228 kb on + strandat 5516.228 kb on + strandat 5516.229 kb on - strandat 5516.229 kb on - strandat 5516.229 kb on - strandat 5516.271 kb on - strandat 5516.297 kb on - strandat 5516.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,513,578 + Pf6N2E2_4772 0.36 +3.6
5,513,578 + Pf6N2E2_4772 0.36 +3.7
5,513,578 + Pf6N2E2_4772 0.36 +4.0
5,513,578 + Pf6N2E2_4772 0.36 +4.0
5,513,578 + Pf6N2E2_4772 0.36 +3.7
5,513,578 + Pf6N2E2_4772 0.36 +4.3
5,513,667 + Pf6N2E2_4772 0.44 +3.3
5,513,722 + Pf6N2E2_4772 0.48 +4.9
5,513,722 + Pf6N2E2_4772 0.48 +3.4
5,514,028 + Pf6N2E2_4772 0.74 +3.7
5,514,028 + Pf6N2E2_4772 0.74 +3.1
5,514,028 + Pf6N2E2_4772 0.74 +3.6
5,514,029 - Pf6N2E2_4772 0.75 +2.6
5,514,029 - Pf6N2E2_4772 0.75 +3.5
5,514,029 - Pf6N2E2_4772 0.75 +3.3
5,514,029 - Pf6N2E2_4772 0.75 +2.2
5,514,029 - Pf6N2E2_4772 0.75 +3.1
5,514,208 + Pf6N2E2_4772 0.90 +3.6
5,514,232 + +3.8
5,514,233 - +2.5
5,514,486 - Pf6N2E2_4773 0.68 +1.0
5,514,573 + +3.7
5,514,573 + +2.8
5,514,573 + +3.8
5,514,573 + +3.0
5,514,573 + +3.5
5,514,574 - -0.1
5,514,574 - -1.1
5,514,574 - +0.3
5,514,574 - +0.3
5,514,574 - +0.2
5,514,578 + +3.0
5,514,578 + +3.1
5,514,579 - -0.1
5,514,619 + +3.4
5,514,641 - +2.9
5,514,733 + Pf6N2E2_4774 0.22 +3.5
5,514,733 + Pf6N2E2_4774 0.22 +3.4
5,514,734 - Pf6N2E2_4774 0.22 +1.8
5,514,802 + Pf6N2E2_4774 0.31 +3.3
5,514,802 + Pf6N2E2_4774 0.31 +4.1
5,514,803 - Pf6N2E2_4774 0.31 +3.1
5,514,803 - Pf6N2E2_4774 0.31 +2.4
5,514,944 - Pf6N2E2_4774 0.50 +2.6
5,515,158 - Pf6N2E2_4774 0.78 +2.6
5,515,168 + Pf6N2E2_4774 0.79 +3.3
5,515,168 + Pf6N2E2_4774 0.79 +3.3
5,515,225 + Pf6N2E2_4774 0.87 +3.6
5,515,225 + Pf6N2E2_4774 0.87 +4.9
5,515,225 + Pf6N2E2_4774 0.87 +3.5
5,515,225 + Pf6N2E2_4774 0.87 +3.9
5,515,225 + Pf6N2E2_4774 0.87 +3.8
5,515,225 + Pf6N2E2_4774 0.87 +3.5
5,515,225 + Pf6N2E2_4774 0.87 +4.0
5,515,225 + Pf6N2E2_4774 0.87 +4.1
5,515,225 + Pf6N2E2_4774 0.87 +3.5
5,515,226 - Pf6N2E2_4774 0.87 +2.7
5,515,226 - Pf6N2E2_4774 0.87 +3.1
5,515,226 - Pf6N2E2_4774 0.87 +0.9
5,515,226 - Pf6N2E2_4774 0.87 +2.3
5,515,226 - Pf6N2E2_4774 0.87 +1.4
5,515,226 - Pf6N2E2_4774 0.87 +1.8
5,515,226 - Pf6N2E2_4774 0.87 +2.5
5,515,226 - Pf6N2E2_4774 0.87 +2.6
5,515,226 - Pf6N2E2_4774 0.87 +2.3
5,515,241 - Pf6N2E2_4774 0.89 +2.8
5,515,262 - +2.5
5,515,262 - +1.6
5,515,262 - +1.9
5,515,262 - +3.1
5,515,262 - +2.8
5,515,360 - +1.3
5,515,360 - +1.0
5,515,439 - Pf6N2E2_4775 0.12 +0.9
5,515,445 - Pf6N2E2_4775 0.12 -1.2
5,515,445 - Pf6N2E2_4775 0.12 +1.6
5,515,582 + Pf6N2E2_4775 0.27 +3.0
5,515,582 + Pf6N2E2_4775 0.27 +2.9
5,515,582 + Pf6N2E2_4775 0.27 +3.4
5,515,659 + Pf6N2E2_4775 0.36 +3.4
5,515,659 + Pf6N2E2_4775 0.36 +4.4
5,515,659 + Pf6N2E2_4775 0.36 +3.3
5,515,660 - Pf6N2E2_4775 0.36 +0.7
5,515,660 - Pf6N2E2_4775 0.36 +0.9
5,515,660 - Pf6N2E2_4775 0.36 +0.6
5,515,660 - Pf6N2E2_4775 0.36 +1.3
5,515,660 - Pf6N2E2_4775 0.36 +0.4
5,515,660 - Pf6N2E2_4775 0.36 +0.3
5,515,660 - Pf6N2E2_4775 0.36 +2.2
5,516,228 + +2.5
5,516,228 + +3.3
5,516,228 + +3.1
5,516,228 + +4.1
5,516,229 - +2.6
5,516,229 - +2.4
5,516,229 - +2.4
5,516,271 - +1.2
5,516,297 - -0.8
5,516,297 - -1.0

Or see this region's nucleotide sequence