Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4619

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4618 and Pf6N2E2_4619 are separated by 840 nucleotidesPf6N2E2_4619 and Pf6N2E2_4620 are separated by 0 nucleotidesPf6N2E2_4620 and Pf6N2E2_4621 overlap by 1 nucleotides Pf6N2E2_4618 - Chemotaxis signal transduction protein, at 5,347,802 to 5,348,281 _4618 Pf6N2E2_4619 - Malonate decarboxylase alpha subunit, at 5,349,122 to 5,350,792 _4619 Pf6N2E2_4620 - Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25), at 5,350,793 to 5,351,668 _4620 Pf6N2E2_4621 - Malonate decarboxylase delta subunit, at 5,351,668 to 5,351,967 _4621 Position (kb) 5349 5350 5351Strain fitness (log2 ratio) -2 -1 0 1 2at 5348.123 kb on + strand, within Pf6N2E2_4618at 5348.124 kb on - strand, within Pf6N2E2_4618at 5348.148 kb on - strand, within Pf6N2E2_4618at 5348.148 kb on - strand, within Pf6N2E2_4618at 5348.205 kb on + strand, within Pf6N2E2_4618at 5348.205 kb on + strand, within Pf6N2E2_4618at 5348.206 kb on - strand, within Pf6N2E2_4618at 5348.206 kb on - strand, within Pf6N2E2_4618at 5348.286 kb on + strandat 5348.286 kb on + strandat 5348.286 kb on + strandat 5348.286 kb on + strandat 5348.286 kb on + strandat 5348.286 kb on + strandat 5348.286 kb on + strandat 5348.286 kb on + strandat 5348.287 kb on - strandat 5348.287 kb on - strandat 5348.287 kb on - strandat 5348.287 kb on - strandat 5348.287 kb on - strandat 5348.296 kb on + strandat 5348.296 kb on + strandat 5348.296 kb on + strandat 5348.296 kb on + strandat 5348.297 kb on - strandat 5348.370 kb on - strandat 5348.370 kb on - strandat 5348.414 kb on + strandat 5348.564 kb on - strandat 5348.626 kb on + strandat 5348.626 kb on + strandat 5348.628 kb on + strandat 5348.655 kb on + strandat 5348.655 kb on + strandat 5348.655 kb on + strandat 5348.655 kb on + strandat 5348.655 kb on + strandat 5348.656 kb on - strandat 5348.656 kb on - strandat 5348.656 kb on - strandat 5348.717 kb on + strandat 5348.719 kb on + strandat 5348.720 kb on - strandat 5348.916 kb on + strandat 5348.916 kb on + strandat 5348.917 kb on - strandat 5348.954 kb on + strandat 5348.955 kb on - strandat 5349.084 kb on + strandat 5349.084 kb on + strandat 5349.084 kb on + strandat 5349.084 kb on + strandat 5349.085 kb on - strandat 5349.085 kb on - strandat 5349.135 kb on + strandat 5349.135 kb on + strandat 5349.135 kb on + strandat 5349.136 kb on - strandat 5349.521 kb on + strand, within Pf6N2E2_4619at 5349.521 kb on + strand, within Pf6N2E2_4619at 5349.521 kb on + strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.522 kb on - strandat 5349.522 kb on - strand, within Pf6N2E2_4619at 5349.534 kb on - strand, within Pf6N2E2_4619at 5349.534 kb on - strand, within Pf6N2E2_4619at 5349.534 kb on - strand, within Pf6N2E2_4619at 5349.607 kb on + strand, within Pf6N2E2_4619at 5349.607 kb on + strand, within Pf6N2E2_4619at 5349.608 kb on - strand, within Pf6N2E2_4619at 5349.608 kb on - strand, within Pf6N2E2_4619at 5349.611 kb on + strand, within Pf6N2E2_4619at 5349.611 kb on + strand, within Pf6N2E2_4619at 5349.612 kb on - strand, within Pf6N2E2_4619at 5349.612 kb on - strand, within Pf6N2E2_4619at 5349.612 kb on - strand, within Pf6N2E2_4619at 5349.612 kb on - strand, within Pf6N2E2_4619at 5349.782 kb on + strand, within Pf6N2E2_4619at 5349.782 kb on + strand, within Pf6N2E2_4619at 5349.783 kb on - strand, within Pf6N2E2_4619at 5349.783 kb on - strand, within Pf6N2E2_4619at 5349.867 kb on - strand, within Pf6N2E2_4619at 5349.944 kb on + strand, within Pf6N2E2_4619at 5349.944 kb on + strand, within Pf6N2E2_4619at 5349.945 kb on - strand, within Pf6N2E2_4619at 5350.082 kb on + strand, within Pf6N2E2_4619at 5350.083 kb on - strand, within Pf6N2E2_4619at 5350.083 kb on - strand, within Pf6N2E2_4619at 5350.169 kb on + strand, within Pf6N2E2_4619at 5350.169 kb on + strand, within Pf6N2E2_4619at 5350.490 kb on + strand, within Pf6N2E2_4619at 5350.535 kb on + strand, within Pf6N2E2_4619at 5350.535 kb on + strand, within Pf6N2E2_4619at 5350.536 kb on - strand, within Pf6N2E2_4619at 5350.536 kb on - strand, within Pf6N2E2_4619at 5350.541 kb on + strand, within Pf6N2E2_4619at 5350.541 kb on + strand, within Pf6N2E2_4619at 5350.541 kb on + strand, within Pf6N2E2_4619at 5350.541 kb on + strand, within Pf6N2E2_4619at 5350.542 kb on - strand, within Pf6N2E2_4619at 5350.542 kb on - strand, within Pf6N2E2_4619at 5350.542 kb on - strand, within Pf6N2E2_4619at 5350.542 kb on - strand, within Pf6N2E2_4619at 5350.760 kb on + strandat 5350.761 kb on - strandat 5350.761 kb on - strandat 5350.761 kb on - strandat 5350.761 kb on - strandat 5350.761 kb on - strandat 5350.761 kb on - strandat 5350.761 kb on - strandat 5350.790 kb on + strandat 5350.790 kb on + strandat 5350.791 kb on - strandat 5351.276 kb on + strand, within Pf6N2E2_4620at 5351.284 kb on - strand, within Pf6N2E2_4620at 5351.445 kb on - strand, within Pf6N2E2_4620at 5351.445 kb on - strand, within Pf6N2E2_4620at 5351.630 kb on - strandat 5351.678 kb on + strandat 5351.678 kb on + strandat 5351.679 kb on - strandat 5351.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,348,123 + Pf6N2E2_4618 0.67 +1.1
5,348,124 - Pf6N2E2_4618 0.67 +1.5
5,348,148 - Pf6N2E2_4618 0.72 +1.5
5,348,148 - Pf6N2E2_4618 0.72 +0.7
5,348,205 + Pf6N2E2_4618 0.84 +0.9
5,348,205 + Pf6N2E2_4618 0.84 -0.4
5,348,206 - Pf6N2E2_4618 0.84 +1.5
5,348,206 - Pf6N2E2_4618 0.84 +1.4
5,348,286 + +0.2
5,348,286 + -0.1
5,348,286 + -1.0
5,348,286 + -0.2
5,348,286 + -1.2
5,348,286 + +0.5
5,348,286 + +0.3
5,348,286 + -0.9
5,348,287 - +0.0
5,348,287 - +2.4
5,348,287 - -0.1
5,348,287 - +0.3
5,348,287 - -0.0
5,348,296 + +1.2
5,348,296 + +0.5
5,348,296 + -0.1
5,348,296 + +0.7
5,348,297 - +0.5
5,348,370 - -0.4
5,348,370 - +0.9
5,348,414 + +0.5
5,348,564 - -1.7
5,348,626 + +0.0
5,348,626 + -1.5
5,348,628 + +0.4
5,348,655 + -0.1
5,348,655 + -0.8
5,348,655 + -0.2
5,348,655 + -1.1
5,348,655 + +1.2
5,348,656 - +1.2
5,348,656 - -0.5
5,348,656 - -0.1
5,348,717 + +0.6
5,348,719 + +0.6
5,348,720 - -1.0
5,348,916 + +0.5
5,348,916 + -0.3
5,348,917 - -1.0
5,348,954 + +0.3
5,348,955 - -0.4
5,349,084 + -0.5
5,349,084 + +0.1
5,349,084 + -1.2
5,349,084 + -0.1
5,349,085 - +0.2
5,349,085 - +0.9
5,349,135 + +0.5
5,349,135 + +0.5
5,349,135 + -0.2
5,349,136 - -1.2
5,349,521 + Pf6N2E2_4619 0.24 +1.2
5,349,521 + Pf6N2E2_4619 0.24 -0.7
5,349,521 + Pf6N2E2_4619 0.24 -1.9
5,349,522 - Pf6N2E2_4619 0.24 -0.6
5,349,522 - Pf6N2E2_4619 0.24 +1.0
5,349,522 - Pf6N2E2_4619 0.24 +0.4
5,349,522 - Pf6N2E2_4619 0.24 -0.0
5,349,522 - Pf6N2E2_4619 0.24 -1.9
5,349,522 - Pf6N2E2_4619 0.24 +0.8
5,349,522 - Pf6N2E2_4619 0.24 -2.0
5,349,522 - Pf6N2E2_4619 0.24 -2.0
5,349,522 - Pf6N2E2_4619 0.24 +0.3
5,349,522 - Pf6N2E2_4619 0.24 -0.0
5,349,522 - Pf6N2E2_4619 0.24 -1.7
5,349,522 - Pf6N2E2_4619 0.24 +0.6
5,349,522 - +1.8
5,349,522 - Pf6N2E2_4619 0.24 -0.5
5,349,534 - Pf6N2E2_4619 0.25 -0.2
5,349,534 - Pf6N2E2_4619 0.25 +0.6
5,349,534 - Pf6N2E2_4619 0.25 +0.4
5,349,607 + Pf6N2E2_4619 0.29 -0.5
5,349,607 + Pf6N2E2_4619 0.29 +0.1
5,349,608 - Pf6N2E2_4619 0.29 -0.6
5,349,608 - Pf6N2E2_4619 0.29 -0.3
5,349,611 + Pf6N2E2_4619 0.29 -0.5
5,349,611 + Pf6N2E2_4619 0.29 +0.1
5,349,612 - Pf6N2E2_4619 0.29 -1.1
5,349,612 - Pf6N2E2_4619 0.29 +0.5
5,349,612 - Pf6N2E2_4619 0.29 -0.3
5,349,612 - Pf6N2E2_4619 0.29 -1.4
5,349,782 + Pf6N2E2_4619 0.39 -0.9
5,349,782 + Pf6N2E2_4619 0.39 +0.7
5,349,783 - Pf6N2E2_4619 0.40 -0.1
5,349,783 - Pf6N2E2_4619 0.40 +0.0
5,349,867 - Pf6N2E2_4619 0.45 +1.2
5,349,944 + Pf6N2E2_4619 0.49 -0.7
5,349,944 + Pf6N2E2_4619 0.49 -0.6
5,349,945 - Pf6N2E2_4619 0.49 -0.3
5,350,082 + Pf6N2E2_4619 0.57 +0.9
5,350,083 - Pf6N2E2_4619 0.58 +1.6
5,350,083 - Pf6N2E2_4619 0.58 +1.4
5,350,169 + Pf6N2E2_4619 0.63 +0.7
5,350,169 + Pf6N2E2_4619 0.63 +0.5
5,350,490 + Pf6N2E2_4619 0.82 -0.3
5,350,535 + Pf6N2E2_4619 0.85 +1.2
5,350,535 + Pf6N2E2_4619 0.85 +0.7
5,350,536 - Pf6N2E2_4619 0.85 -0.7
5,350,536 - Pf6N2E2_4619 0.85 -1.8
5,350,541 + Pf6N2E2_4619 0.85 +0.4
5,350,541 + Pf6N2E2_4619 0.85 -0.2
5,350,541 + Pf6N2E2_4619 0.85 -1.7
5,350,541 + Pf6N2E2_4619 0.85 +0.8
5,350,542 - Pf6N2E2_4619 0.85 -1.1
5,350,542 - Pf6N2E2_4619 0.85 +0.1
5,350,542 - Pf6N2E2_4619 0.85 +0.4
5,350,542 - Pf6N2E2_4619 0.85 +0.0
5,350,760 + +0.7
5,350,761 - -0.9
5,350,761 - -0.2
5,350,761 - -0.5
5,350,761 - +0.6
5,350,761 - -0.4
5,350,761 - -0.1
5,350,761 - +1.0
5,350,790 + -0.8
5,350,790 + +0.2
5,350,791 - +0.4
5,351,276 + Pf6N2E2_4620 0.55 -0.7
5,351,284 - Pf6N2E2_4620 0.56 +0.3
5,351,445 - Pf6N2E2_4620 0.74 +0.0
5,351,445 - Pf6N2E2_4620 0.74 -0.0
5,351,630 - -1.3
5,351,678 + +0.2
5,351,678 + -0.7
5,351,679 - +0.9
5,351,679 - +0.7

Or see this region's nucleotide sequence