Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4335

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4334 and Pf6N2E2_4335 overlap by 4 nucleotidesPf6N2E2_4335 and Pf6N2E2_4336 are separated by 81 nucleotides Pf6N2E2_4334 - Uncharacterized protein ImpC, at 5,056,173 to 5,057,675 _4334 Pf6N2E2_4335 - Uncharacterized protein ImpB, at 5,057,672 to 5,058,178 _4335 Pf6N2E2_4336 - Uncharacterized protein ImpA, at 5,058,260 to 5,059,303 _4336 Position (kb) 5057 5058 5059Strain fitness (log2 ratio) -1 0 1 2 3at 5056.819 kb on + strand, within Pf6N2E2_4334at 5056.840 kb on + strand, within Pf6N2E2_4334at 5056.840 kb on + strand, within Pf6N2E2_4334at 5056.840 kb on + strand, within Pf6N2E2_4334at 5056.996 kb on + strand, within Pf6N2E2_4334at 5057.167 kb on + strand, within Pf6N2E2_4334at 5057.167 kb on + strand, within Pf6N2E2_4334at 5057.167 kb on + strand, within Pf6N2E2_4334at 5057.168 kb on - strand, within Pf6N2E2_4334at 5057.171 kb on - strand, within Pf6N2E2_4334at 5057.192 kb on - strand, within Pf6N2E2_4334at 5057.227 kb on + strand, within Pf6N2E2_4334at 5057.227 kb on + strand, within Pf6N2E2_4334at 5057.227 kb on + strand, within Pf6N2E2_4334at 5057.228 kb on - strand, within Pf6N2E2_4334at 5057.228 kb on - strand, within Pf6N2E2_4334at 5057.362 kb on + strand, within Pf6N2E2_4334at 5057.363 kb on - strand, within Pf6N2E2_4334at 5057.657 kb on + strandat 5057.657 kb on + strandat 5057.657 kb on + strandat 5057.658 kb on - strandat 5057.658 kb on - strandat 5057.658 kb on - strandat 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.779 kb on - strand, within Pf6N2E2_4335at 5057.779 kb on - strand, within Pf6N2E2_4335at 5057.779 kb on - strand, within Pf6N2E2_4335at 5057.779 kb on - strand, within Pf6N2E2_4335at 5057.779 kb on - strand, within Pf6N2E2_4335at 5058.056 kb on + strand, within Pf6N2E2_4335at 5058.099 kb on + strand, within Pf6N2E2_4335at 5058.261 kb on + strandat 5058.262 kb on - strandat 5058.408 kb on + strand, within Pf6N2E2_4336at 5058.408 kb on + strand, within Pf6N2E2_4336at 5058.408 kb on + strand, within Pf6N2E2_4336at 5058.408 kb on + strand, within Pf6N2E2_4336at 5058.409 kb on - strand, within Pf6N2E2_4336at 5058.409 kb on - strand, within Pf6N2E2_4336at 5058.409 kb on - strand, within Pf6N2E2_4336at 5058.409 kb on - strand, within Pf6N2E2_4336at 5058.409 kb on - strand, within Pf6N2E2_4336at 5058.411 kb on + strand, within Pf6N2E2_4336at 5058.412 kb on - strand, within Pf6N2E2_4336at 5058.412 kb on - strand, within Pf6N2E2_4336at 5058.412 kb on - strand, within Pf6N2E2_4336at 5058.487 kb on + strand, within Pf6N2E2_4336at 5058.487 kb on + strand, within Pf6N2E2_4336at 5058.996 kb on + strand, within Pf6N2E2_4336at 5058.996 kb on + strand, within Pf6N2E2_4336at 5058.996 kb on + strand, within Pf6N2E2_4336at 5058.997 kb on - strand, within Pf6N2E2_4336at 5058.997 kb on - strand, within Pf6N2E2_4336

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,056,819 + Pf6N2E2_4334 0.43 +0.0
5,056,840 + Pf6N2E2_4334 0.44 -1.1
5,056,840 + Pf6N2E2_4334 0.44 +2.5
5,056,840 + Pf6N2E2_4334 0.44 -0.3
5,056,996 + Pf6N2E2_4334 0.55 +1.8
5,057,167 + Pf6N2E2_4334 0.66 +1.5
5,057,167 + Pf6N2E2_4334 0.66 +0.5
5,057,167 + Pf6N2E2_4334 0.66 +0.6
5,057,168 - Pf6N2E2_4334 0.66 +0.8
5,057,171 - Pf6N2E2_4334 0.66 -0.3
5,057,192 - Pf6N2E2_4334 0.68 +0.6
5,057,227 + Pf6N2E2_4334 0.70 -0.3
5,057,227 + Pf6N2E2_4334 0.70 +0.2
5,057,227 + Pf6N2E2_4334 0.70 -0.7
5,057,228 - Pf6N2E2_4334 0.70 +0.5
5,057,228 - Pf6N2E2_4334 0.70 +1.5
5,057,362 + Pf6N2E2_4334 0.79 +0.2
5,057,363 - Pf6N2E2_4334 0.79 +1.4
5,057,657 + +0.8
5,057,657 + -0.2
5,057,657 + -0.3
5,057,658 - +3.0
5,057,658 - -0.3
5,057,658 - +0.9
5,057,778 + Pf6N2E2_4335 0.21 -0.6
5,057,778 + Pf6N2E2_4335 0.21 +0.6
5,057,778 + Pf6N2E2_4335 0.21 +1.3
5,057,778 + Pf6N2E2_4335 0.21 +1.9
5,057,778 + Pf6N2E2_4335 0.21 +0.4
5,057,778 + Pf6N2E2_4335 0.21 +0.5
5,057,778 + Pf6N2E2_4335 0.21 +0.4
5,057,778 + Pf6N2E2_4335 0.21 +1.0
5,057,778 + Pf6N2E2_4335 0.21 +1.5
5,057,779 - Pf6N2E2_4335 0.21 -0.2
5,057,779 - Pf6N2E2_4335 0.21 +2.2
5,057,779 - Pf6N2E2_4335 0.21 -0.4
5,057,779 - Pf6N2E2_4335 0.21 -0.7
5,057,779 - Pf6N2E2_4335 0.21 +0.6
5,058,056 + Pf6N2E2_4335 0.76 +1.5
5,058,099 + Pf6N2E2_4335 0.84 +0.7
5,058,261 + +0.6
5,058,262 - +0.0
5,058,408 + Pf6N2E2_4336 0.14 +0.6
5,058,408 + Pf6N2E2_4336 0.14 +1.2
5,058,408 + Pf6N2E2_4336 0.14 +0.3
5,058,408 + Pf6N2E2_4336 0.14 +2.3
5,058,409 - Pf6N2E2_4336 0.14 -0.3
5,058,409 - Pf6N2E2_4336 0.14 +1.4
5,058,409 - Pf6N2E2_4336 0.14 -1.4
5,058,409 - Pf6N2E2_4336 0.14 +1.6
5,058,409 - Pf6N2E2_4336 0.14 +1.7
5,058,411 + Pf6N2E2_4336 0.14 -0.8
5,058,412 - Pf6N2E2_4336 0.15 +0.3
5,058,412 - Pf6N2E2_4336 0.15 +0.7
5,058,412 - Pf6N2E2_4336 0.15 -0.5
5,058,487 + Pf6N2E2_4336 0.22 +0.8
5,058,487 + Pf6N2E2_4336 0.22 -0.6
5,058,996 + Pf6N2E2_4336 0.70 -0.8
5,058,996 + Pf6N2E2_4336 0.70 -0.1
5,058,996 + Pf6N2E2_4336 0.70 -1.6
5,058,997 - Pf6N2E2_4336 0.71 -0.0
5,058,997 - Pf6N2E2_4336 0.71 +0.4

Or see this region's nucleotide sequence