Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2524

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2523 and Pf6N2E2_2524 are separated by 136 nucleotidesPf6N2E2_2524 and Pf6N2E2_2525 are separated by 61 nucleotidesPf6N2E2_2525 and Pf6N2E2_2526 are separated by 4 nucleotides Pf6N2E2_2523 - Methylthioribose-1-phosphate isomerase (EC 5.3.1.23), at 2,979,842 to 2,980,888 _2523 Pf6N2E2_2524 - S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase, at 2,981,025 to 2,982,356 _2524 Pf6N2E2_2525 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 2,982,418 to 2,983,116 _2525 Pf6N2E2_2526 - Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase, at 2,983,121 to 2,983,792 _2526 Position (kb) 2981 2982 2983Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2980.137 kb on + strand, within Pf6N2E2_2523at 2980.137 kb on + strand, within Pf6N2E2_2523at 2980.137 kb on + strand, within Pf6N2E2_2523at 2980.137 kb on + strand, within Pf6N2E2_2523at 2980.137 kb on + strand, within Pf6N2E2_2523at 2980.137 kb on + strand, within Pf6N2E2_2523at 2980.137 kb on + strand, within Pf6N2E2_2523at 2980.137 kb on + strand, within Pf6N2E2_2523at 2980.137 kb on + strand, within Pf6N2E2_2523at 2980.137 kb on + strand, within Pf6N2E2_2523at 2980.138 kb on - strand, within Pf6N2E2_2523at 2980.138 kb on - strand, within Pf6N2E2_2523at 2980.138 kb on - strand, within Pf6N2E2_2523at 2980.138 kb on - strand, within Pf6N2E2_2523at 2980.138 kb on - strand, within Pf6N2E2_2523at 2980.141 kb on + strand, within Pf6N2E2_2523at 2980.142 kb on - strand, within Pf6N2E2_2523at 2980.332 kb on + strand, within Pf6N2E2_2523at 2980.333 kb on - strand, within Pf6N2E2_2523at 2980.358 kb on - strand, within Pf6N2E2_2523at 2980.359 kb on + strand, within Pf6N2E2_2523at 2980.359 kb on + strand, within Pf6N2E2_2523at 2980.359 kb on + strand, within Pf6N2E2_2523at 2980.359 kb on + strand, within Pf6N2E2_2523at 2980.360 kb on - strand, within Pf6N2E2_2523at 2980.360 kb on - strand, within Pf6N2E2_2523at 2980.360 kb on - strand, within Pf6N2E2_2523at 2980.360 kb on - strand, within Pf6N2E2_2523at 2980.360 kb on - strand, within Pf6N2E2_2523at 2980.360 kb on - strand, within Pf6N2E2_2523at 2980.360 kb on - strand, within Pf6N2E2_2523at 2980.725 kb on + strand, within Pf6N2E2_2523at 2980.725 kb on + strand, within Pf6N2E2_2523at 2980.726 kb on - strand, within Pf6N2E2_2523at 2980.726 kb on - strand, within Pf6N2E2_2523at 2980.726 kb on - strand, within Pf6N2E2_2523at 2980.726 kb on - strand, within Pf6N2E2_2523at 2980.726 kb on - strand, within Pf6N2E2_2523at 2980.726 kb on - strand, within Pf6N2E2_2523at 2980.854 kb on + strandat 2980.855 kb on - strandat 2980.855 kb on - strandat 2980.954 kb on + strandat 2980.955 kb on - strandat 2980.955 kb on - strandat 2980.956 kb on + strandat 2980.957 kb on - strandat 2980.957 kb on - strandat 2980.984 kb on + strandat 2980.986 kb on + strandat 2981.001 kb on + strandat 2981.001 kb on + strandat 2981.001 kb on + strandat 2981.003 kb on + strandat 2981.053 kb on + strandat 2981.053 kb on + strandat 2981.053 kb on + strandat 2981.053 kb on + strandat 2981.053 kb on + strandat 2981.053 kb on + strandat 2981.056 kb on + strandat 2981.056 kb on + strandat 2981.098 kb on + strandat 2981.098 kb on + strandat 2981.353 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.421 kb on + strand, within Pf6N2E2_2524at 2981.427 kb on + strand, within Pf6N2E2_2524at 2981.615 kb on + strand, within Pf6N2E2_2524at 2981.681 kb on + strand, within Pf6N2E2_2524at 2981.681 kb on + strand, within Pf6N2E2_2524at 2981.681 kb on + strand, within Pf6N2E2_2524at 2981.682 kb on - strand, within Pf6N2E2_2524at 2981.682 kb on - strand, within Pf6N2E2_2524at 2982.186 kb on + strand, within Pf6N2E2_2524at 2982.186 kb on + strand, within Pf6N2E2_2524at 2982.210 kb on + strand, within Pf6N2E2_2524at 2982.210 kb on + strand, within Pf6N2E2_2524at 2982.210 kb on + strand, within Pf6N2E2_2524at 2982.210 kb on + strand, within Pf6N2E2_2524at 2982.210 kb on + strand, within Pf6N2E2_2524at 2982.210 kb on + strand, within Pf6N2E2_2524at 2982.210 kb on + strand, within Pf6N2E2_2524at 2982.210 kb on + strand, within Pf6N2E2_2524at 2982.210 kb on + strand, within Pf6N2E2_2524at 2982.210 kb on + strand, within Pf6N2E2_2524at 2982.232 kb on + strandat 2982.354 kb on + strandat 2983.114 kb on + strandat 2983.114 kb on + strandat 2983.115 kb on - strandat 2983.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,980,137 + Pf6N2E2_2523 0.28 +0.8
2,980,137 + Pf6N2E2_2523 0.28 -0.1
2,980,137 + Pf6N2E2_2523 0.28 +1.5
2,980,137 + Pf6N2E2_2523 0.28 +0.7
2,980,137 + Pf6N2E2_2523 0.28 -0.0
2,980,137 + Pf6N2E2_2523 0.28 +0.2
2,980,137 + Pf6N2E2_2523 0.28 +0.6
2,980,137 + Pf6N2E2_2523 0.28 -0.6
2,980,137 + Pf6N2E2_2523 0.28 -1.1
2,980,137 + Pf6N2E2_2523 0.28 -2.1
2,980,138 - Pf6N2E2_2523 0.28 +0.7
2,980,138 - Pf6N2E2_2523 0.28 -2.0
2,980,138 - Pf6N2E2_2523 0.28 +1.2
2,980,138 - Pf6N2E2_2523 0.28 -0.9
2,980,138 - Pf6N2E2_2523 0.28 +0.8
2,980,141 + Pf6N2E2_2523 0.29 -0.2
2,980,142 - Pf6N2E2_2523 0.29 +0.2
2,980,332 + Pf6N2E2_2523 0.47 +1.7
2,980,333 - Pf6N2E2_2523 0.47 +0.4
2,980,358 - Pf6N2E2_2523 0.49 +0.5
2,980,359 + Pf6N2E2_2523 0.49 -0.4
2,980,359 + Pf6N2E2_2523 0.49 +0.2
2,980,359 + Pf6N2E2_2523 0.49 -0.4
2,980,359 + Pf6N2E2_2523 0.49 +0.6
2,980,360 - Pf6N2E2_2523 0.49 +0.4
2,980,360 - Pf6N2E2_2523 0.49 -0.2
2,980,360 - Pf6N2E2_2523 0.49 +0.4
2,980,360 - Pf6N2E2_2523 0.49 +1.6
2,980,360 - Pf6N2E2_2523 0.49 -0.4
2,980,360 - Pf6N2E2_2523 0.49 -1.0
2,980,360 - Pf6N2E2_2523 0.49 +0.1
2,980,725 + Pf6N2E2_2523 0.84 +0.2
2,980,725 + Pf6N2E2_2523 0.84 +0.1
2,980,726 - Pf6N2E2_2523 0.84 +0.4
2,980,726 - Pf6N2E2_2523 0.84 -1.2
2,980,726 - Pf6N2E2_2523 0.84 +1.3
2,980,726 - Pf6N2E2_2523 0.84 -1.0
2,980,726 - Pf6N2E2_2523 0.84 +0.0
2,980,726 - Pf6N2E2_2523 0.84 +0.1
2,980,854 + +0.8
2,980,855 - -0.9
2,980,855 - -0.2
2,980,954 + +0.7
2,980,955 - -0.7
2,980,955 - +0.3
2,980,956 + -0.3
2,980,957 - -1.5
2,980,957 - +0.9
2,980,984 + -0.3
2,980,986 + -1.3
2,981,001 + -0.6
2,981,001 + +1.6
2,981,001 + +1.1
2,981,003 + +1.2
2,981,053 + +1.3
2,981,053 + +0.8
2,981,053 + -0.6
2,981,053 + -0.6
2,981,053 + -0.0
2,981,053 + -1.7
2,981,056 + -1.4
2,981,056 + +0.5
2,981,098 + +0.8
2,981,098 + +1.0
2,981,353 + Pf6N2E2_2524 0.25 +0.5
2,981,421 + Pf6N2E2_2524 0.30 +0.8
2,981,421 + Pf6N2E2_2524 0.30 +1.7
2,981,421 + Pf6N2E2_2524 0.30 -0.3
2,981,421 + Pf6N2E2_2524 0.30 +1.9
2,981,421 + Pf6N2E2_2524 0.30 +0.9
2,981,421 + Pf6N2E2_2524 0.30 -0.3
2,981,421 + Pf6N2E2_2524 0.30 +0.3
2,981,421 + Pf6N2E2_2524 0.30 +1.6
2,981,421 + Pf6N2E2_2524 0.30 +0.7
2,981,421 + Pf6N2E2_2524 0.30 +0.1
2,981,421 + Pf6N2E2_2524 0.30 +0.9
2,981,421 + Pf6N2E2_2524 0.30 +0.4
2,981,427 + Pf6N2E2_2524 0.30 -0.8
2,981,615 + Pf6N2E2_2524 0.44 -0.1
2,981,681 + Pf6N2E2_2524 0.49 +1.2
2,981,681 + Pf6N2E2_2524 0.49 +1.2
2,981,681 + Pf6N2E2_2524 0.49 +1.1
2,981,682 - Pf6N2E2_2524 0.49 +2.0
2,981,682 - Pf6N2E2_2524 0.49 +2.6
2,982,186 + Pf6N2E2_2524 0.87 +2.1
2,982,186 + Pf6N2E2_2524 0.87 +1.5
2,982,210 + Pf6N2E2_2524 0.89 +1.6
2,982,210 + Pf6N2E2_2524 0.89 +1.6
2,982,210 + Pf6N2E2_2524 0.89 +2.2
2,982,210 + Pf6N2E2_2524 0.89 +2.5
2,982,210 + Pf6N2E2_2524 0.89 +0.7
2,982,210 + Pf6N2E2_2524 0.89 +2.2
2,982,210 + Pf6N2E2_2524 0.89 +2.3
2,982,210 + Pf6N2E2_2524 0.89 +1.1
2,982,210 + Pf6N2E2_2524 0.89 +1.0
2,982,210 + Pf6N2E2_2524 0.89 +1.6
2,982,232 + +2.1
2,982,354 + +2.3
2,983,114 + -0.0
2,983,114 + -1.4
2,983,115 - +2.9
2,983,115 - +0.9

Or see this region's nucleotide sequence