Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02935 and CCNA_02936 are separated by 103 nucleotides CCNA_02936 and CCNA_02937 are separated by 102 nucleotides CCNA_02937 and CCNA_02938 overlap by 4 nucleotides CCNA_02938 and CCNA_02939 are separated by 156 nucleotides
CCNA_02935: CCNA_02935 - methyl-accepting chemotaxis protein, at 3,094,958 to 3,097,171
_02935
CCNA_02936: CCNA_02936 - glutathione S-transferase, at 3,097,275 to 3,097,937
_02936
CCNA_02937: CCNA_02937 - hypothetical protein, at 3,098,040 to 3,098,702
_02937
CCNA_02938: CCNA_02938 - outer membrane protein A, at 3,098,699 to 3,099,274
_02938
CCNA_02939: CCNA_02939 - hypothetical protein, at 3,099,431 to 3,099,787
_02939
Position (kb)
3098
3099 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3097.045 kb on - strand at 3097.045 kb on - strand at 3097.045 kb on - strand at 3097.047 kb on + strand at 3097.047 kb on + strand at 3097.055 kb on - strand at 3097.091 kb on - strand at 3097.091 kb on - strand at 3097.093 kb on - strand at 3097.139 kb on + strand at 3097.173 kb on + strand at 3097.183 kb on + strand at 3097.183 kb on + strand at 3097.183 kb on + strand at 3097.190 kb on + strand at 3097.221 kb on + strand at 3097.238 kb on + strand at 3097.238 kb on + strand at 3097.248 kb on - strand at 3097.253 kb on + strand at 3097.253 kb on + strand at 3097.261 kb on - strand at 3097.261 kb on - strand at 3097.300 kb on - strand at 3097.319 kb on + strand at 3097.335 kb on + strand at 3097.341 kb on + strand at 3097.343 kb on - strand, within CCNA_02936 at 3097.349 kb on - strand, within CCNA_02936 at 3097.424 kb on + strand, within CCNA_02936 at 3097.453 kb on + strand, within CCNA_02936 at 3097.490 kb on + strand, within CCNA_02936 at 3097.502 kb on + strand, within CCNA_02936 at 3097.550 kb on + strand, within CCNA_02936 at 3097.568 kb on + strand, within CCNA_02936 at 3097.608 kb on + strand, within CCNA_02936 at 3097.634 kb on - strand, within CCNA_02936 at 3097.652 kb on - strand, within CCNA_02936 at 3097.661 kb on + strand, within CCNA_02936 at 3097.699 kb on - strand, within CCNA_02936 at 3097.717 kb on - strand, within CCNA_02936 at 3097.723 kb on - strand, within CCNA_02936 at 3097.773 kb on + strand, within CCNA_02936 at 3097.773 kb on + strand, within CCNA_02936 at 3097.781 kb on - strand, within CCNA_02936 at 3097.781 kb on - strand, within CCNA_02936 at 3097.853 kb on + strand, within CCNA_02936 at 3097.853 kb on + strand, within CCNA_02936 at 3097.853 kb on + strand, within CCNA_02936 at 3097.861 kb on - strand, within CCNA_02936 at 3097.875 kb on + strand at 3097.888 kb on + strand at 3097.920 kb on + strand at 3097.933 kb on + strand at 3097.943 kb on + strand at 3097.960 kb on + strand at 3097.960 kb on + strand at 3097.977 kb on + strand at 3097.977 kb on + strand at 3097.977 kb on + strand at 3097.977 kb on + strand at 3097.982 kb on + strand at 3097.985 kb on - strand at 3097.985 kb on - strand at 3098.100 kb on - strand at 3098.244 kb on + strand, within CCNA_02937 at 3098.315 kb on + strand, within CCNA_02937 at 3098.333 kb on + strand, within CCNA_02937 at 3098.397 kb on + strand, within CCNA_02937 at 3098.397 kb on - strand, within CCNA_02937 at 3098.402 kb on - strand, within CCNA_02937 at 3098.423 kb on - strand, within CCNA_02937 at 3098.438 kb on + strand, within CCNA_02937 at 3098.438 kb on + strand, within CCNA_02937 at 3098.438 kb on + strand, within CCNA_02937 at 3098.446 kb on - strand, within CCNA_02937 at 3098.446 kb on - strand, within CCNA_02937 at 3098.446 kb on - strand, within CCNA_02937 at 3098.446 kb on - strand, within CCNA_02937 at 3098.462 kb on + strand, within CCNA_02937 at 3098.462 kb on + strand, within CCNA_02937 at 3098.462 kb on + strand, within CCNA_02937 at 3098.508 kb on + strand, within CCNA_02937 at 3098.601 kb on + strand, within CCNA_02937 at 3098.655 kb on - strand at 3098.705 kb on - strand at 3098.720 kb on - strand at 3098.724 kb on + strand at 3098.734 kb on + strand at 3098.755 kb on - strand at 3098.762 kb on - strand, within CCNA_02938 at 3098.772 kb on - strand, within CCNA_02938 at 3098.772 kb on - strand, within CCNA_02938 at 3098.799 kb on + strand, within CCNA_02938 at 3098.807 kb on - strand, within CCNA_02938 at 3098.863 kb on + strand, within CCNA_02938 at 3098.887 kb on + strand, within CCNA_02938 at 3098.895 kb on - strand, within CCNA_02938 at 3098.913 kb on - strand, within CCNA_02938 at 3098.931 kb on - strand, within CCNA_02938 at 3098.942 kb on - strand, within CCNA_02938 at 3098.942 kb on - strand, within CCNA_02938 at 3098.947 kb on + strand, within CCNA_02938 at 3098.954 kb on + strand, within CCNA_02938 at 3098.991 kb on + strand, within CCNA_02938 at 3099.032 kb on + strand, within CCNA_02938 at 3099.033 kb on + strand, within CCNA_02938 at 3099.070 kb on + strand, within CCNA_02938 at 3099.071 kb on + strand, within CCNA_02938 at 3099.099 kb on + strand, within CCNA_02938 at 3099.099 kb on + strand, within CCNA_02938 at 3099.099 kb on + strand, within CCNA_02938 at 3099.100 kb on + strand, within CCNA_02938 at 3099.109 kb on + strand, within CCNA_02938 at 3099.164 kb on + strand, within CCNA_02938 at 3099.224 kb on + strand at 3099.236 kb on - strand at 3099.277 kb on + strand at 3099.283 kb on - strand at 3099.285 kb on - strand at 3099.311 kb on + strand at 3099.311 kb on + strand at 3099.318 kb on - strand at 3099.319 kb on - strand at 3099.410 kb on + strand at 3099.410 kb on + strand at 3099.419 kb on + strand at 3099.459 kb on + strand at 3099.501 kb on + strand, within CCNA_02939 at 3099.501 kb on + strand, within CCNA_02939 at 3099.506 kb on + strand, within CCNA_02939 at 3099.509 kb on - strand, within CCNA_02939 at 3099.514 kb on - strand, within CCNA_02939 at 3099.514 kb on - strand, within CCNA_02939 at 3099.537 kb on + strand, within CCNA_02939 at 3099.593 kb on - strand, within CCNA_02939 at 3099.640 kb on + strand, within CCNA_02939 at 3099.681 kb on + strand, within CCNA_02939 at 3099.691 kb on + strand, within CCNA_02939
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,097,045 - -1.4 3,097,045 - -2.6 3,097,045 - -0.7 3,097,047 + -1.8 3,097,047 + +1.8 3,097,055 - +0.4 3,097,091 - +1.4 3,097,091 - +3.4 3,097,093 - +0.6 3,097,139 + -1.6 3,097,173 + -0.8 3,097,183 + +1.0 3,097,183 + +0.6 3,097,183 + +1.3 3,097,190 + +1.0 3,097,221 + -0.4 3,097,238 + -1.6 3,097,238 + +2.1 3,097,248 - -1.9 3,097,253 + -0.9 3,097,253 + -2.1 3,097,261 - -0.8 3,097,261 - +1.6 3,097,300 - +0.5 3,097,319 + -1.0 3,097,335 + -0.3 3,097,341 + -2.6 3,097,343 - CCNA_02936 0.10 -1.2 3,097,349 - CCNA_02936 0.11 -2.0 3,097,424 + CCNA_02936 0.22 -0.6 3,097,453 + CCNA_02936 0.27 -1.6 3,097,490 + CCNA_02936 0.32 +0.8 3,097,502 + CCNA_02936 0.34 -0.2 3,097,550 + CCNA_02936 0.41 -0.7 3,097,568 + CCNA_02936 0.44 -1.5 3,097,608 + CCNA_02936 0.50 +1.2 3,097,634 - CCNA_02936 0.54 +1.1 3,097,652 - CCNA_02936 0.57 -1.1 3,097,661 + CCNA_02936 0.58 -1.1 3,097,699 - CCNA_02936 0.64 -1.5 3,097,717 - CCNA_02936 0.67 -2.1 3,097,723 - CCNA_02936 0.68 -0.4 3,097,773 + CCNA_02936 0.75 +0.2 3,097,773 + CCNA_02936 0.75 -1.8 3,097,781 - CCNA_02936 0.76 +1.6 3,097,781 - CCNA_02936 0.76 +0.6 3,097,853 + CCNA_02936 0.87 -0.9 3,097,853 + CCNA_02936 0.87 -2.3 3,097,853 + CCNA_02936 0.87 +1.0 3,097,861 - CCNA_02936 0.88 -1.0 3,097,875 + -0.2 3,097,888 + -0.9 3,097,920 + -0.0 3,097,933 + +0.7 3,097,943 + +1.1 3,097,960 + +2.6 3,097,960 + +0.6 3,097,977 + +0.1 3,097,977 + +0.5 3,097,977 + -0.2 3,097,977 + +0.7 3,097,982 + -1.8 3,097,985 - -2.8 3,097,985 - -0.8 3,098,100 - +3.1 3,098,244 + CCNA_02937 0.31 -2.2 3,098,315 + CCNA_02937 0.41 -1.3 3,098,333 + CCNA_02937 0.44 -1.8 3,098,397 + CCNA_02937 0.54 -0.9 3,098,397 - CCNA_02937 0.54 -2.2 3,098,402 - CCNA_02937 0.55 +0.8 3,098,423 - CCNA_02937 0.58 +0.6 3,098,438 + CCNA_02937 0.60 -0.5 3,098,438 + CCNA_02937 0.60 -0.8 3,098,438 + CCNA_02937 0.60 +0.4 3,098,446 - CCNA_02937 0.61 -0.9 3,098,446 - CCNA_02937 0.61 +0.5 3,098,446 - CCNA_02937 0.61 -1.2 3,098,446 - CCNA_02937 0.61 -0.2 3,098,462 + CCNA_02937 0.64 -2.9 3,098,462 + CCNA_02937 0.64 -0.5 3,098,462 + CCNA_02937 0.64 -1.1 3,098,508 + CCNA_02937 0.71 +0.3 3,098,601 + CCNA_02937 0.85 -0.0 3,098,655 - +0.1 3,098,705 - -0.2 3,098,720 - -1.2 3,098,724 + -0.8 3,098,734 + +1.0 3,098,755 - -1.0 3,098,762 - CCNA_02938 0.11 +1.1 3,098,772 - CCNA_02938 0.13 +1.4 3,098,772 - CCNA_02938 0.13 -1.0 3,098,799 + CCNA_02938 0.17 -2.1 3,098,807 - CCNA_02938 0.19 -0.4 3,098,863 + CCNA_02938 0.28 -0.2 3,098,887 + CCNA_02938 0.33 -1.2 3,098,895 - CCNA_02938 0.34 -0.6 3,098,913 - CCNA_02938 0.37 +2.3 3,098,931 - CCNA_02938 0.40 +0.2 3,098,942 - CCNA_02938 0.42 -1.8 3,098,942 - CCNA_02938 0.42 +1.6 3,098,947 + CCNA_02938 0.43 +0.5 3,098,954 + CCNA_02938 0.44 -0.6 3,098,991 + CCNA_02938 0.51 +0.0 3,099,032 + CCNA_02938 0.58 -0.6 3,099,033 + CCNA_02938 0.58 -1.6 3,099,070 + CCNA_02938 0.64 +1.9 3,099,071 + CCNA_02938 0.65 +1.0 3,099,099 + CCNA_02938 0.69 -1.0 3,099,099 + CCNA_02938 0.69 -0.1 3,099,099 + CCNA_02938 0.69 -0.2 3,099,100 + CCNA_02938 0.70 +0.6 3,099,109 + CCNA_02938 0.71 +1.8 3,099,164 + CCNA_02938 0.81 +1.0 3,099,224 + -0.6 3,099,236 - -0.3 3,099,277 + +0.6 3,099,283 - -2.2 3,099,285 - +0.8 3,099,311 + -0.1 3,099,311 + +1.0 3,099,318 - -1.1 3,099,319 - -1.0 3,099,410 + -0.5 3,099,410 + +1.7 3,099,419 + -0.0 3,099,459 + +1.2 3,099,501 + CCNA_02939 0.20 -0.7 3,099,501 + CCNA_02939 0.20 -2.2 3,099,506 + CCNA_02939 0.21 +1.3 3,099,509 - CCNA_02939 0.22 +2.4 3,099,514 - CCNA_02939 0.23 +2.1 3,099,514 - CCNA_02939 0.23 -2.9 3,099,537 + CCNA_02939 0.30 +1.6 3,099,593 - CCNA_02939 0.45 +0.6 3,099,640 + CCNA_02939 0.59 -0.7 3,099,681 + CCNA_02939 0.70 -0.8 3,099,691 + CCNA_02939 0.73 +0.1
Or see this region's nucleotide sequence