Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02937

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02935 and CCNA_02936 are separated by 103 nucleotidesCCNA_02936 and CCNA_02937 are separated by 102 nucleotidesCCNA_02937 and CCNA_02938 overlap by 4 nucleotidesCCNA_02938 and CCNA_02939 are separated by 156 nucleotides CCNA_02935: CCNA_02935 - methyl-accepting chemotaxis protein, at 3,094,958 to 3,097,171 _02935 CCNA_02936: CCNA_02936 - glutathione S-transferase, at 3,097,275 to 3,097,937 _02936 CCNA_02937: CCNA_02937 - hypothetical protein, at 3,098,040 to 3,098,702 _02937 CCNA_02938: CCNA_02938 - outer membrane protein A, at 3,098,699 to 3,099,274 _02938 CCNA_02939: CCNA_02939 - hypothetical protein, at 3,099,431 to 3,099,787 _02939 Position (kb) 3098 3099Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3097.045 kb on - strandat 3097.045 kb on - strandat 3097.045 kb on - strandat 3097.047 kb on + strandat 3097.047 kb on + strandat 3097.055 kb on - strandat 3097.091 kb on - strandat 3097.091 kb on - strandat 3097.093 kb on - strandat 3097.139 kb on + strandat 3097.173 kb on + strandat 3097.183 kb on + strandat 3097.183 kb on + strandat 3097.183 kb on + strandat 3097.190 kb on + strandat 3097.221 kb on + strandat 3097.238 kb on + strandat 3097.238 kb on + strandat 3097.248 kb on - strandat 3097.253 kb on + strandat 3097.253 kb on + strandat 3097.261 kb on - strandat 3097.261 kb on - strandat 3097.300 kb on - strandat 3097.319 kb on + strandat 3097.335 kb on + strandat 3097.341 kb on + strandat 3097.343 kb on - strand, within CCNA_02936at 3097.349 kb on - strand, within CCNA_02936at 3097.424 kb on + strand, within CCNA_02936at 3097.453 kb on + strand, within CCNA_02936at 3097.490 kb on + strand, within CCNA_02936at 3097.502 kb on + strand, within CCNA_02936at 3097.550 kb on + strand, within CCNA_02936at 3097.568 kb on + strand, within CCNA_02936at 3097.608 kb on + strand, within CCNA_02936at 3097.634 kb on - strand, within CCNA_02936at 3097.652 kb on - strand, within CCNA_02936at 3097.661 kb on + strand, within CCNA_02936at 3097.699 kb on - strand, within CCNA_02936at 3097.717 kb on - strand, within CCNA_02936at 3097.723 kb on - strand, within CCNA_02936at 3097.773 kb on + strand, within CCNA_02936at 3097.773 kb on + strand, within CCNA_02936at 3097.781 kb on - strand, within CCNA_02936at 3097.781 kb on - strand, within CCNA_02936at 3097.853 kb on + strand, within CCNA_02936at 3097.853 kb on + strand, within CCNA_02936at 3097.853 kb on + strand, within CCNA_02936at 3097.861 kb on - strand, within CCNA_02936at 3097.875 kb on + strandat 3097.888 kb on + strandat 3097.920 kb on + strandat 3097.933 kb on + strandat 3097.943 kb on + strandat 3097.960 kb on + strandat 3097.960 kb on + strandat 3097.977 kb on + strandat 3097.977 kb on + strandat 3097.977 kb on + strandat 3097.977 kb on + strandat 3097.982 kb on + strandat 3097.985 kb on - strandat 3097.985 kb on - strandat 3098.100 kb on - strandat 3098.244 kb on + strand, within CCNA_02937at 3098.315 kb on + strand, within CCNA_02937at 3098.333 kb on + strand, within CCNA_02937at 3098.397 kb on + strand, within CCNA_02937at 3098.397 kb on - strand, within CCNA_02937at 3098.402 kb on - strand, within CCNA_02937at 3098.423 kb on - strand, within CCNA_02937at 3098.438 kb on + strand, within CCNA_02937at 3098.438 kb on + strand, within CCNA_02937at 3098.438 kb on + strand, within CCNA_02937at 3098.446 kb on - strand, within CCNA_02937at 3098.446 kb on - strand, within CCNA_02937at 3098.446 kb on - strand, within CCNA_02937at 3098.446 kb on - strand, within CCNA_02937at 3098.462 kb on + strand, within CCNA_02937at 3098.462 kb on + strand, within CCNA_02937at 3098.462 kb on + strand, within CCNA_02937at 3098.508 kb on + strand, within CCNA_02937at 3098.601 kb on + strand, within CCNA_02937at 3098.655 kb on - strandat 3098.705 kb on - strandat 3098.720 kb on - strandat 3098.724 kb on + strandat 3098.734 kb on + strandat 3098.755 kb on - strandat 3098.762 kb on - strand, within CCNA_02938at 3098.772 kb on - strand, within CCNA_02938at 3098.772 kb on - strand, within CCNA_02938at 3098.799 kb on + strand, within CCNA_02938at 3098.807 kb on - strand, within CCNA_02938at 3098.863 kb on + strand, within CCNA_02938at 3098.887 kb on + strand, within CCNA_02938at 3098.895 kb on - strand, within CCNA_02938at 3098.913 kb on - strand, within CCNA_02938at 3098.931 kb on - strand, within CCNA_02938at 3098.942 kb on - strand, within CCNA_02938at 3098.942 kb on - strand, within CCNA_02938at 3098.947 kb on + strand, within CCNA_02938at 3098.954 kb on + strand, within CCNA_02938at 3098.991 kb on + strand, within CCNA_02938at 3099.032 kb on + strand, within CCNA_02938at 3099.033 kb on + strand, within CCNA_02938at 3099.070 kb on + strand, within CCNA_02938at 3099.071 kb on + strand, within CCNA_02938at 3099.099 kb on + strand, within CCNA_02938at 3099.099 kb on + strand, within CCNA_02938at 3099.099 kb on + strand, within CCNA_02938at 3099.100 kb on + strand, within CCNA_02938at 3099.109 kb on + strand, within CCNA_02938at 3099.164 kb on + strand, within CCNA_02938at 3099.224 kb on + strandat 3099.236 kb on - strandat 3099.277 kb on + strandat 3099.283 kb on - strandat 3099.285 kb on - strandat 3099.311 kb on + strandat 3099.311 kb on + strandat 3099.318 kb on - strandat 3099.319 kb on - strandat 3099.410 kb on + strandat 3099.410 kb on + strandat 3099.419 kb on + strandat 3099.459 kb on + strandat 3099.501 kb on + strand, within CCNA_02939at 3099.501 kb on + strand, within CCNA_02939at 3099.506 kb on + strand, within CCNA_02939at 3099.509 kb on - strand, within CCNA_02939at 3099.514 kb on - strand, within CCNA_02939at 3099.514 kb on - strand, within CCNA_02939at 3099.537 kb on + strand, within CCNA_02939at 3099.593 kb on - strand, within CCNA_02939at 3099.640 kb on + strand, within CCNA_02939at 3099.681 kb on + strand, within CCNA_02939at 3099.691 kb on + strand, within CCNA_02939

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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3,097,045 - -1.4
3,097,045 - -2.6
3,097,045 - -0.7
3,097,047 + -1.8
3,097,047 + +1.8
3,097,055 - +0.4
3,097,091 - +1.4
3,097,091 - +3.4
3,097,093 - +0.6
3,097,139 + -1.6
3,097,173 + -0.8
3,097,183 + +1.0
3,097,183 + +0.6
3,097,183 + +1.3
3,097,190 + +1.0
3,097,221 + -0.4
3,097,238 + -1.6
3,097,238 + +2.1
3,097,248 - -1.9
3,097,253 + -0.9
3,097,253 + -2.1
3,097,261 - -0.8
3,097,261 - +1.6
3,097,300 - +0.5
3,097,319 + -1.0
3,097,335 + -0.3
3,097,341 + -2.6
3,097,343 - CCNA_02936 0.10 -1.2
3,097,349 - CCNA_02936 0.11 -2.0
3,097,424 + CCNA_02936 0.22 -0.6
3,097,453 + CCNA_02936 0.27 -1.6
3,097,490 + CCNA_02936 0.32 +0.8
3,097,502 + CCNA_02936 0.34 -0.2
3,097,550 + CCNA_02936 0.41 -0.7
3,097,568 + CCNA_02936 0.44 -1.5
3,097,608 + CCNA_02936 0.50 +1.2
3,097,634 - CCNA_02936 0.54 +1.1
3,097,652 - CCNA_02936 0.57 -1.1
3,097,661 + CCNA_02936 0.58 -1.1
3,097,699 - CCNA_02936 0.64 -1.5
3,097,717 - CCNA_02936 0.67 -2.1
3,097,723 - CCNA_02936 0.68 -0.4
3,097,773 + CCNA_02936 0.75 +0.2
3,097,773 + CCNA_02936 0.75 -1.8
3,097,781 - CCNA_02936 0.76 +1.6
3,097,781 - CCNA_02936 0.76 +0.6
3,097,853 + CCNA_02936 0.87 -0.9
3,097,853 + CCNA_02936 0.87 -2.3
3,097,853 + CCNA_02936 0.87 +1.0
3,097,861 - CCNA_02936 0.88 -1.0
3,097,875 + -0.2
3,097,888 + -0.9
3,097,920 + -0.0
3,097,933 + +0.7
3,097,943 + +1.1
3,097,960 + +2.6
3,097,960 + +0.6
3,097,977 + +0.1
3,097,977 + +0.5
3,097,977 + -0.2
3,097,977 + +0.7
3,097,982 + -1.8
3,097,985 - -2.8
3,097,985 - -0.8
3,098,100 - +3.1
3,098,244 + CCNA_02937 0.31 -2.2
3,098,315 + CCNA_02937 0.41 -1.3
3,098,333 + CCNA_02937 0.44 -1.8
3,098,397 + CCNA_02937 0.54 -0.9
3,098,397 - CCNA_02937 0.54 -2.2
3,098,402 - CCNA_02937 0.55 +0.8
3,098,423 - CCNA_02937 0.58 +0.6
3,098,438 + CCNA_02937 0.60 -0.5
3,098,438 + CCNA_02937 0.60 -0.8
3,098,438 + CCNA_02937 0.60 +0.4
3,098,446 - CCNA_02937 0.61 -0.9
3,098,446 - CCNA_02937 0.61 +0.5
3,098,446 - CCNA_02937 0.61 -1.2
3,098,446 - CCNA_02937 0.61 -0.2
3,098,462 + CCNA_02937 0.64 -2.9
3,098,462 + CCNA_02937 0.64 -0.5
3,098,462 + CCNA_02937 0.64 -1.1
3,098,508 + CCNA_02937 0.71 +0.3
3,098,601 + CCNA_02937 0.85 -0.0
3,098,655 - +0.1
3,098,705 - -0.2
3,098,720 - -1.2
3,098,724 + -0.8
3,098,734 + +1.0
3,098,755 - -1.0
3,098,762 - CCNA_02938 0.11 +1.1
3,098,772 - CCNA_02938 0.13 +1.4
3,098,772 - CCNA_02938 0.13 -1.0
3,098,799 + CCNA_02938 0.17 -2.1
3,098,807 - CCNA_02938 0.19 -0.4
3,098,863 + CCNA_02938 0.28 -0.2
3,098,887 + CCNA_02938 0.33 -1.2
3,098,895 - CCNA_02938 0.34 -0.6
3,098,913 - CCNA_02938 0.37 +2.3
3,098,931 - CCNA_02938 0.40 +0.2
3,098,942 - CCNA_02938 0.42 -1.8
3,098,942 - CCNA_02938 0.42 +1.6
3,098,947 + CCNA_02938 0.43 +0.5
3,098,954 + CCNA_02938 0.44 -0.6
3,098,991 + CCNA_02938 0.51 +0.0
3,099,032 + CCNA_02938 0.58 -0.6
3,099,033 + CCNA_02938 0.58 -1.6
3,099,070 + CCNA_02938 0.64 +1.9
3,099,071 + CCNA_02938 0.65 +1.0
3,099,099 + CCNA_02938 0.69 -1.0
3,099,099 + CCNA_02938 0.69 -0.1
3,099,099 + CCNA_02938 0.69 -0.2
3,099,100 + CCNA_02938 0.70 +0.6
3,099,109 + CCNA_02938 0.71 +1.8
3,099,164 + CCNA_02938 0.81 +1.0
3,099,224 + -0.6
3,099,236 - -0.3
3,099,277 + +0.6
3,099,283 - -2.2
3,099,285 - +0.8
3,099,311 + -0.1
3,099,311 + +1.0
3,099,318 - -1.1
3,099,319 - -1.0
3,099,410 + -0.5
3,099,410 + +1.7
3,099,419 + -0.0
3,099,459 + +1.2
3,099,501 + CCNA_02939 0.20 -0.7
3,099,501 + CCNA_02939 0.20 -2.2
3,099,506 + CCNA_02939 0.21 +1.3
3,099,509 - CCNA_02939 0.22 +2.4
3,099,514 - CCNA_02939 0.23 +2.1
3,099,514 - CCNA_02939 0.23 -2.9
3,099,537 + CCNA_02939 0.30 +1.6
3,099,593 - CCNA_02939 0.45 +0.6
3,099,640 + CCNA_02939 0.59 -0.7
3,099,681 + CCNA_02939 0.70 -0.8
3,099,691 + CCNA_02939 0.73 +0.1

Or see this region's nucleotide sequence