Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02440 and CCNA_02441 are separated by 338 nucleotides CCNA_02441 and CCNA_02442 are separated by 12 nucleotides
CCNA_02440: CCNA_02440 - SalR-family ligand-binding transcriptional regulator, at 2,581,207 to 2,582,247
_02440
CCNA_02441: CCNA_02441 - HTH DNA-binding protein, at 2,582,586 to 2,582,744
_02441
CCNA_02442: CCNA_02442 - beta-xylosidase II, at 2,582,757 to 2,584,259
_02442
Position (kb)
2582
2583 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2581.631 kb on + strand, within CCNA_02440 at 2581.631 kb on + strand, within CCNA_02440 at 2581.633 kb on + strand, within CCNA_02440 at 2581.639 kb on - strand, within CCNA_02440 at 2581.667 kb on - strand, within CCNA_02440 at 2581.667 kb on - strand, within CCNA_02440 at 2581.667 kb on - strand, within CCNA_02440 at 2581.718 kb on + strand, within CCNA_02440 at 2581.726 kb on - strand, within CCNA_02440 at 2581.730 kb on - strand, within CCNA_02440 at 2581.755 kb on + strand, within CCNA_02440 at 2581.769 kb on + strand, within CCNA_02440 at 2581.835 kb on + strand, within CCNA_02440 at 2581.843 kb on - strand, within CCNA_02440 at 2581.844 kb on - strand, within CCNA_02440 at 2581.870 kb on + strand, within CCNA_02440 at 2581.870 kb on + strand, within CCNA_02440 at 2581.873 kb on + strand, within CCNA_02440 at 2581.873 kb on + strand, within CCNA_02440 at 2581.882 kb on + strand, within CCNA_02440 at 2581.886 kb on + strand, within CCNA_02440 at 2582.024 kb on + strand, within CCNA_02440 at 2582.026 kb on - strand, within CCNA_02440 at 2582.032 kb on - strand, within CCNA_02440 at 2582.128 kb on - strand, within CCNA_02440 at 2582.155 kb on - strand at 2582.242 kb on + strand at 2582.242 kb on + strand at 2582.242 kb on + strand at 2582.242 kb on + strand at 2582.250 kb on - strand at 2582.250 kb on - strand at 2582.272 kb on + strand at 2582.280 kb on - strand at 2582.280 kb on - strand at 2582.280 kb on - strand at 2582.307 kb on + strand at 2582.318 kb on + strand at 2582.326 kb on - strand at 2582.337 kb on + strand at 2582.339 kb on - strand at 2582.339 kb on - strand at 2582.345 kb on - strand at 2582.345 kb on - strand at 2582.345 kb on - strand at 2582.394 kb on + strand at 2582.402 kb on - strand at 2582.404 kb on + strand at 2582.407 kb on - strand at 2582.407 kb on - strand at 2582.419 kb on + strand at 2582.440 kb on + strand at 2582.468 kb on - strand at 2582.487 kb on - strand at 2582.488 kb on + strand at 2582.507 kb on + strand at 2582.519 kb on + strand at 2582.527 kb on - strand at 2582.632 kb on + strand, within CCNA_02441 at 2582.636 kb on - strand, within CCNA_02441 at 2582.640 kb on + strand, within CCNA_02441 at 2582.655 kb on + strand, within CCNA_02441 at 2582.681 kb on - strand, within CCNA_02441 at 2582.736 kb on - strand at 2582.746 kb on - strand at 2582.755 kb on + strand at 2582.755 kb on + strand at 2582.755 kb on + strand at 2582.763 kb on - strand at 2582.763 kb on - strand at 2582.763 kb on - strand at 2582.763 kb on - strand at 2582.763 kb on - strand at 2582.763 kb on - strand at 2582.763 kb on - strand at 2582.763 kb on - strand at 2582.785 kb on - strand at 2582.827 kb on + strand at 2582.835 kb on + strand at 2582.843 kb on - strand at 2582.877 kb on - strand at 2582.877 kb on - strand at 2582.890 kb on + strand at 2582.916 kb on - strand, within CCNA_02442 at 2582.998 kb on - strand, within CCNA_02442 at 2583.016 kb on + strand, within CCNA_02442 at 2583.016 kb on + strand, within CCNA_02442 at 2583.043 kb on + strand, within CCNA_02442 at 2583.050 kb on + strand, within CCNA_02442 at 2583.050 kb on + strand, within CCNA_02442 at 2583.077 kb on - strand, within CCNA_02442 at 2583.113 kb on - strand, within CCNA_02442 at 2583.139 kb on + strand, within CCNA_02442 at 2583.139 kb on + strand, within CCNA_02442 at 2583.147 kb on - strand, within CCNA_02442 at 2583.157 kb on + strand, within CCNA_02442 at 2583.157 kb on + strand, within CCNA_02442 at 2583.157 kb on + strand, within CCNA_02442 at 2583.170 kb on - strand, within CCNA_02442 at 2583.175 kb on - strand, within CCNA_02442 at 2583.213 kb on - strand, within CCNA_02442 at 2583.250 kb on - strand, within CCNA_02442 at 2583.293 kb on + strand, within CCNA_02442 at 2583.313 kb on + strand, within CCNA_02442 at 2583.319 kb on + strand, within CCNA_02442 at 2583.319 kb on + strand, within CCNA_02442 at 2583.321 kb on - strand, within CCNA_02442 at 2583.339 kb on - strand, within CCNA_02442 at 2583.340 kb on - strand, within CCNA_02442 at 2583.366 kb on - strand, within CCNA_02442 at 2583.381 kb on + strand, within CCNA_02442 at 2583.381 kb on + strand, within CCNA_02442 at 2583.381 kb on + strand, within CCNA_02442 at 2583.389 kb on - strand, within CCNA_02442 at 2583.401 kb on + strand, within CCNA_02442 at 2583.401 kb on + strand at 2583.409 kb on - strand, within CCNA_02442 at 2583.409 kb on - strand, within CCNA_02442 at 2583.409 kb on - strand, within CCNA_02442 at 2583.409 kb on - strand, within CCNA_02442 at 2583.432 kb on - strand, within CCNA_02442 at 2583.435 kb on - strand, within CCNA_02442 at 2583.447 kb on - strand, within CCNA_02442 at 2583.465 kb on - strand, within CCNA_02442 at 2583.465 kb on - strand, within CCNA_02442 at 2583.465 kb on - strand, within CCNA_02442 at 2583.526 kb on - strand, within CCNA_02442 at 2583.573 kb on - strand, within CCNA_02442 at 2583.619 kb on + strand, within CCNA_02442 at 2583.627 kb on + strand, within CCNA_02442 at 2583.635 kb on - strand, within CCNA_02442 at 2583.682 kb on - strand, within CCNA_02442 at 2583.682 kb on - strand, within CCNA_02442 at 2583.710 kb on + strand, within CCNA_02442
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,581,631 + CCNA_02440 0.41 -0.2 2,581,631 + CCNA_02440 0.41 -2.2 2,581,633 + CCNA_02440 0.41 -0.8 2,581,639 - CCNA_02440 0.41 -0.8 2,581,667 - CCNA_02440 0.44 -1.1 2,581,667 - CCNA_02440 0.44 -0.4 2,581,667 - CCNA_02440 0.44 -0.7 2,581,718 + CCNA_02440 0.49 +0.6 2,581,726 - CCNA_02440 0.50 +0.3 2,581,730 - CCNA_02440 0.50 -0.9 2,581,755 + CCNA_02440 0.53 +1.2 2,581,769 + CCNA_02440 0.54 +0.5 2,581,835 + CCNA_02440 0.60 -0.4 2,581,843 - CCNA_02440 0.61 -0.1 2,581,844 - CCNA_02440 0.61 +0.4 2,581,870 + CCNA_02440 0.64 -0.9 2,581,870 + CCNA_02440 0.64 +2.5 2,581,873 + CCNA_02440 0.64 -1.2 2,581,873 + CCNA_02440 0.64 -0.7 2,581,882 + CCNA_02440 0.65 +0.5 2,581,886 + CCNA_02440 0.65 +0.2 2,582,024 + CCNA_02440 0.78 -0.9 2,582,026 - CCNA_02440 0.79 +0.3 2,582,032 - CCNA_02440 0.79 -2.1 2,582,128 - CCNA_02440 0.88 +1.8 2,582,155 - -0.7 2,582,242 + -0.8 2,582,242 + -1.7 2,582,242 + +0.5 2,582,242 + -0.1 2,582,250 - -0.9 2,582,250 - -0.1 2,582,272 + -0.3 2,582,280 - +0.3 2,582,280 - +1.5 2,582,280 - -0.7 2,582,307 + +0.7 2,582,318 + +1.0 2,582,326 - -0.7 2,582,337 + +0.1 2,582,339 - -1.2 2,582,339 - -1.1 2,582,345 - -0.1 2,582,345 - -2.5 2,582,345 - -0.5 2,582,394 + -0.9 2,582,402 - -2.8 2,582,404 + +0.4 2,582,407 - +0.5 2,582,407 - -0.6 2,582,419 + -0.5 2,582,440 + +1.1 2,582,468 - +0.5 2,582,487 - +0.1 2,582,488 + +1.3 2,582,507 + +0.1 2,582,519 + -0.9 2,582,527 - -0.4 2,582,632 + CCNA_02441 0.29 -0.5 2,582,636 - CCNA_02441 0.31 -0.9 2,582,640 + CCNA_02441 0.34 -1.4 2,582,655 + CCNA_02441 0.43 -1.4 2,582,681 - CCNA_02441 0.60 +0.9 2,582,736 - -1.1 2,582,746 - +0.9 2,582,755 + -1.4 2,582,755 + -0.4 2,582,755 + +0.5 2,582,763 - +1.6 2,582,763 - -0.9 2,582,763 - +0.1 2,582,763 - +0.9 2,582,763 - -0.1 2,582,763 - +0.1 2,582,763 - +0.5 2,582,763 - -0.7 2,582,785 - -1.2 2,582,827 + +0.8 2,582,835 + -2.2 2,582,843 - +0.2 2,582,877 - -1.9 2,582,877 - +0.0 2,582,890 + -0.6 2,582,916 - CCNA_02442 0.11 -0.9 2,582,998 - CCNA_02442 0.16 +1.8 2,583,016 + CCNA_02442 0.17 -1.9 2,583,016 + CCNA_02442 0.17 +0.5 2,583,043 + CCNA_02442 0.19 +1.3 2,583,050 + CCNA_02442 0.19 -1.6 2,583,050 + CCNA_02442 0.19 -1.7 2,583,077 - CCNA_02442 0.21 -1.0 2,583,113 - CCNA_02442 0.24 -0.1 2,583,139 + CCNA_02442 0.25 +0.5 2,583,139 + CCNA_02442 0.25 -0.4 2,583,147 - CCNA_02442 0.26 +0.6 2,583,157 + CCNA_02442 0.27 -1.9 2,583,157 + CCNA_02442 0.27 +1.9 2,583,157 + CCNA_02442 0.27 -1.6 2,583,170 - CCNA_02442 0.27 +1.9 2,583,175 - CCNA_02442 0.28 +1.5 2,583,213 - CCNA_02442 0.30 +0.9 2,583,250 - CCNA_02442 0.33 -1.2 2,583,293 + CCNA_02442 0.36 +1.3 2,583,313 + CCNA_02442 0.37 -0.4 2,583,319 + CCNA_02442 0.37 -1.6 2,583,319 + CCNA_02442 0.37 -0.2 2,583,321 - CCNA_02442 0.38 +0.5 2,583,339 - CCNA_02442 0.39 -1.7 2,583,340 - CCNA_02442 0.39 -0.5 2,583,366 - CCNA_02442 0.41 -0.7 2,583,381 + CCNA_02442 0.42 -0.1 2,583,381 + CCNA_02442 0.42 -1.7 2,583,381 + CCNA_02442 0.42 +0.9 2,583,389 - CCNA_02442 0.42 +2.1 2,583,401 + CCNA_02442 0.43 -1.6 2,583,401 + +0.9 2,583,409 - CCNA_02442 0.43 -0.4 2,583,409 - CCNA_02442 0.43 +1.5 2,583,409 - CCNA_02442 0.43 -0.9 2,583,409 - CCNA_02442 0.43 -1.9 2,583,432 - CCNA_02442 0.45 -1.1 2,583,435 - CCNA_02442 0.45 -0.7 2,583,447 - CCNA_02442 0.46 +0.3 2,583,465 - CCNA_02442 0.47 -1.8 2,583,465 - CCNA_02442 0.47 +0.9 2,583,465 - CCNA_02442 0.47 -0.5 2,583,526 - CCNA_02442 0.51 -0.2 2,583,573 - CCNA_02442 0.54 +1.0 2,583,619 + CCNA_02442 0.57 -1.0 2,583,627 + CCNA_02442 0.58 -0.5 2,583,635 - CCNA_02442 0.58 +0.2 2,583,682 - CCNA_02442 0.62 -0.9 2,583,682 - CCNA_02442 0.62 -0.2 2,583,710 + CCNA_02442 0.63 +0.7
Or see this region's nucleotide sequence