Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01182

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01180 and CCNA_01181 are separated by 92 nucleotidesCCNA_01181 and CCNA_01182 are separated by 190 nucleotidesCCNA_01182 and CCNA_01183 are separated by 18 nucleotides CCNA_01180: CCNA_01180 - penicillin acylase, at 1,299,008 to 1,301,185 _01180 CCNA_01181: CCNA_01181 - hypothetical protein, at 1,301,278 to 1,301,802 _01181 CCNA_01182: CCNA_01182 - glutathione S-transferase, at 1,301,993 to 1,302,586 _01182 CCNA_01183: CCNA_01183 - zinc dependent phospholipase C/S1-P1 nuclease-family protein, at 1,302,605 to 1,303,633 _01183 Position (kb) 1301 1302 1303Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1300.994 kb on - strandat 1300.997 kb on + strandat 1301.005 kb on - strandat 1301.006 kb on - strandat 1301.009 kb on + strandat 1301.011 kb on - strandat 1301.015 kb on - strandat 1301.039 kb on - strandat 1301.073 kb on + strandat 1301.094 kb on + strandat 1301.128 kb on - strandat 1301.155 kb on + strandat 1301.163 kb on - strandat 1301.163 kb on - strandat 1301.163 kb on - strandat 1301.171 kb on - strandat 1301.235 kb on - strandat 1301.252 kb on - strandat 1301.294 kb on + strandat 1301.294 kb on + strandat 1301.294 kb on + strandat 1301.302 kb on - strandat 1301.309 kb on + strandat 1301.309 kb on + strandat 1301.317 kb on - strandat 1301.342 kb on - strand, within CCNA_01181at 1301.361 kb on + strand, within CCNA_01181at 1301.375 kb on + strand, within CCNA_01181at 1301.383 kb on - strand, within CCNA_01181at 1301.383 kb on - strand, within CCNA_01181at 1301.383 kb on - strand, within CCNA_01181at 1301.407 kb on - strand, within CCNA_01181at 1301.477 kb on - strand, within CCNA_01181at 1301.522 kb on - strand, within CCNA_01181at 1301.522 kb on - strand, within CCNA_01181at 1301.522 kb on - strand, within CCNA_01181at 1301.590 kb on - strand, within CCNA_01181at 1301.596 kb on - strand, within CCNA_01181at 1301.616 kb on + strand, within CCNA_01181at 1301.643 kb on - strand, within CCNA_01181at 1301.658 kb on - strand, within CCNA_01181at 1301.740 kb on + strand, within CCNA_01181at 1301.838 kb on + strandat 1301.838 kb on + strandat 1301.838 kb on + strandat 1301.838 kb on + strandat 1301.846 kb on - strandat 1301.846 kb on - strandat 1301.859 kb on + strandat 1301.893 kb on + strandat 1301.893 kb on + strandat 1301.906 kb on - strandat 1301.989 kb on - strandat 1301.990 kb on + strandat 1301.990 kb on + strandat 1301.990 kb on + strandat 1301.995 kb on + strandat 1302.077 kb on + strand, within CCNA_01182at 1302.082 kb on + strand, within CCNA_01182at 1302.136 kb on - strand, within CCNA_01182at 1302.137 kb on + strand, within CCNA_01182at 1302.137 kb on + strand, within CCNA_01182at 1302.137 kb on + strand, within CCNA_01182at 1302.138 kb on - strand, within CCNA_01182at 1302.139 kb on + strand, within CCNA_01182at 1302.145 kb on - strand, within CCNA_01182at 1302.145 kb on - strand, within CCNA_01182at 1302.145 kb on - strand, within CCNA_01182at 1302.145 kb on - strand, within CCNA_01182at 1302.145 kb on - strand, within CCNA_01182at 1302.145 kb on - strand, within CCNA_01182at 1302.145 kb on - strand, within CCNA_01182at 1302.160 kb on - strand, within CCNA_01182at 1302.180 kb on - strand, within CCNA_01182at 1302.202 kb on - strand, within CCNA_01182at 1302.231 kb on + strand, within CCNA_01182at 1302.231 kb on + strand, within CCNA_01182at 1302.231 kb on + strand, within CCNA_01182at 1302.239 kb on - strand, within CCNA_01182at 1302.244 kb on - strand, within CCNA_01182at 1302.254 kb on + strand, within CCNA_01182at 1302.262 kb on - strand, within CCNA_01182at 1302.296 kb on + strand, within CCNA_01182at 1302.296 kb on - strand, within CCNA_01182at 1302.298 kb on + strand, within CCNA_01182at 1302.298 kb on + strand, within CCNA_01182at 1302.305 kb on + strand, within CCNA_01182at 1302.306 kb on - strand, within CCNA_01182at 1302.310 kb on + strand, within CCNA_01182at 1302.340 kb on + strand, within CCNA_01182at 1302.346 kb on - strand, within CCNA_01182at 1302.346 kb on - strand, within CCNA_01182at 1302.347 kb on - strand, within CCNA_01182at 1302.366 kb on + strand, within CCNA_01182at 1302.366 kb on + strand, within CCNA_01182at 1302.374 kb on - strand, within CCNA_01182at 1302.374 kb on - strand, within CCNA_01182at 1302.374 kb on - strand, within CCNA_01182at 1302.374 kb on - strand, within CCNA_01182at 1302.412 kb on + strand, within CCNA_01182at 1302.412 kb on + strand, within CCNA_01182at 1302.412 kb on + strand, within CCNA_01182at 1302.417 kb on + strand, within CCNA_01182at 1302.420 kb on - strand, within CCNA_01182at 1302.422 kb on - strand, within CCNA_01182at 1302.432 kb on - strand, within CCNA_01182at 1302.458 kb on - strand, within CCNA_01182at 1302.485 kb on + strand, within CCNA_01182at 1302.485 kb on + strand, within CCNA_01182at 1302.485 kb on + strand, within CCNA_01182at 1302.485 kb on + strand, within CCNA_01182at 1302.485 kb on + strand, within CCNA_01182at 1302.485 kb on + strand, within CCNA_01182at 1302.485 kb on + strand, within CCNA_01182at 1302.487 kb on - strand, within CCNA_01182at 1302.493 kb on - strand, within CCNA_01182at 1302.493 kb on - strand, within CCNA_01182at 1302.493 kb on - strand, within CCNA_01182at 1302.493 kb on - strand, within CCNA_01182at 1302.493 kb on - strand, within CCNA_01182at 1302.493 kb on - strand, within CCNA_01182at 1302.493 kb on - strand, within CCNA_01182at 1302.493 kb on - strand, within CCNA_01182at 1302.493 kb on - strand, within CCNA_01182at 1302.511 kb on - strand, within CCNA_01182at 1302.521 kb on + strand, within CCNA_01182at 1302.537 kb on - strandat 1302.550 kb on + strandat 1302.567 kb on - strandat 1302.602 kb on - strandat 1302.656 kb on - strandat 1302.676 kb on + strandat 1302.676 kb on + strandat 1302.684 kb on - strandat 1302.684 kb on - strandat 1302.684 kb on - strandat 1302.684 kb on - strandat 1302.686 kb on - strandat 1302.687 kb on + strandat 1302.704 kb on - strandat 1302.740 kb on - strand, within CCNA_01183at 1302.759 kb on + strand, within CCNA_01183at 1302.815 kb on + strand, within CCNA_01183at 1302.816 kb on + strand, within CCNA_01183at 1302.839 kb on + strand, within CCNA_01183at 1302.839 kb on + strand, within CCNA_01183at 1302.872 kb on + strand, within CCNA_01183at 1302.907 kb on - strand, within CCNA_01183at 1302.935 kb on + strand, within CCNA_01183at 1302.935 kb on + strand, within CCNA_01183at 1302.935 kb on + strand, within CCNA_01183at 1302.935 kb on + strand, within CCNA_01183at 1302.935 kb on + strand, within CCNA_01183at 1302.937 kb on + strand, within CCNA_01183at 1302.937 kb on + strand, within CCNA_01183at 1302.937 kb on + strand, within CCNA_01183at 1302.939 kb on + strand, within CCNA_01183at 1302.943 kb on - strand, within CCNA_01183at 1302.945 kb on - strand, within CCNA_01183at 1302.945 kb on - strand, within CCNA_01183at 1302.972 kb on + strand, within CCNA_01183at 1302.980 kb on - strand, within CCNA_01183at 1302.980 kb on - strand, within CCNA_01183at 1302.980 kb on - strand, within CCNA_01183at 1303.014 kb on + strand, within CCNA_01183at 1303.025 kb on + strand, within CCNA_01183at 1303.063 kb on + strand, within CCNA_01183at 1303.083 kb on + strand, within CCNA_01183at 1303.099 kb on + strand, within CCNA_01183at 1303.107 kb on - strand, within CCNA_01183at 1303.107 kb on - strand, within CCNA_01183at 1303.107 kb on - strand, within CCNA_01183at 1303.110 kb on + strand, within CCNA_01183at 1303.117 kb on - strand, within CCNA_01183at 1303.127 kb on - strand, within CCNA_01183at 1303.127 kb on - strand, within CCNA_01183at 1303.138 kb on + strand, within CCNA_01183at 1303.189 kb on + strand, within CCNA_01183at 1303.204 kb on + strand, within CCNA_01183at 1303.207 kb on - strand, within CCNA_01183at 1303.237 kb on + strand, within CCNA_01183at 1303.237 kb on + strand, within CCNA_01183at 1303.270 kb on + strand, within CCNA_01183at 1303.278 kb on - strand, within CCNA_01183at 1303.278 kb on - strand, within CCNA_01183at 1303.278 kb on - strand, within CCNA_01183at 1303.280 kb on + strand, within CCNA_01183at 1303.280 kb on + strand, within CCNA_01183at 1303.332 kb on + strand, within CCNA_01183at 1303.347 kb on - strand, within CCNA_01183at 1303.355 kb on + strand, within CCNA_01183at 1303.355 kb on + strand, within CCNA_01183at 1303.355 kb on + strandat 1303.370 kb on + strand, within CCNA_01183at 1303.464 kb on + strand, within CCNA_01183at 1303.464 kb on - strandat 1303.469 kb on + strand, within CCNA_01183at 1303.469 kb on + strand, within CCNA_01183at 1303.472 kb on - strand, within CCNA_01183at 1303.482 kb on - strand, within CCNA_01183at 1303.567 kb on + strandat 1303.580 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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1,300,994 - -2.3
1,300,997 + +0.5
1,301,005 - +0.1
1,301,006 - -0.1
1,301,009 + +0.3
1,301,011 - -0.5
1,301,015 - +1.4
1,301,039 - -0.9
1,301,073 + +0.6
1,301,094 + -2.2
1,301,128 - +0.6
1,301,155 + -1.5
1,301,163 - -0.9
1,301,163 - +0.2
1,301,163 - -0.3
1,301,171 - -0.0
1,301,235 - +0.9
1,301,252 - -0.3
1,301,294 + +2.9
1,301,294 + +0.1
1,301,294 + -2.5
1,301,302 - +0.1
1,301,309 + -0.8
1,301,309 + -1.5
1,301,317 - -0.5
1,301,342 - CCNA_01181 0.12 +1.1
1,301,361 + CCNA_01181 0.16 -0.7
1,301,375 + CCNA_01181 0.18 +0.1
1,301,383 - CCNA_01181 0.20 +0.7
1,301,383 - CCNA_01181 0.20 +0.8
1,301,383 - CCNA_01181 0.20 -0.1
1,301,407 - CCNA_01181 0.25 +0.4
1,301,477 - CCNA_01181 0.38 +0.3
1,301,522 - CCNA_01181 0.46 +0.7
1,301,522 - CCNA_01181 0.46 +0.6
1,301,522 - CCNA_01181 0.46 +0.7
1,301,590 - CCNA_01181 0.59 -0.1
1,301,596 - CCNA_01181 0.61 -0.9
1,301,616 + CCNA_01181 0.64 +1.2
1,301,643 - CCNA_01181 0.70 +0.9
1,301,658 - CCNA_01181 0.72 +1.0
1,301,740 + CCNA_01181 0.88 +0.1
1,301,838 + -0.4
1,301,838 + +2.9
1,301,838 + -2.9
1,301,838 + -0.9
1,301,846 - +0.5
1,301,846 - +0.9
1,301,859 + +1.3
1,301,893 + +0.1
1,301,893 + +2.5
1,301,906 - +0.9
1,301,989 - -0.5
1,301,990 + +1.2
1,301,990 + +0.5
1,301,990 + -0.4
1,301,995 + -0.5
1,302,077 + CCNA_01182 0.14 -0.6
1,302,082 + CCNA_01182 0.15 -2.5
1,302,136 - CCNA_01182 0.24 -1.1
1,302,137 + CCNA_01182 0.24 +0.3
1,302,137 + CCNA_01182 0.24 +0.5
1,302,137 + CCNA_01182 0.24 -0.5
1,302,138 - CCNA_01182 0.24 -0.7
1,302,139 + CCNA_01182 0.25 -0.8
1,302,145 - CCNA_01182 0.26 -1.0
1,302,145 - CCNA_01182 0.26 -0.9
1,302,145 - CCNA_01182 0.26 -2.6
1,302,145 - CCNA_01182 0.26 +1.5
1,302,145 - CCNA_01182 0.26 +0.5
1,302,145 - CCNA_01182 0.26 -1.4
1,302,145 - CCNA_01182 0.26 -2.1
1,302,160 - CCNA_01182 0.28 -2.6
1,302,180 - CCNA_01182 0.31 +0.1
1,302,202 - CCNA_01182 0.35 -0.5
1,302,231 + CCNA_01182 0.40 -0.2
1,302,231 + CCNA_01182 0.40 -1.5
1,302,231 + CCNA_01182 0.40 +0.3
1,302,239 - CCNA_01182 0.41 -0.1
1,302,244 - CCNA_01182 0.42 -0.9
1,302,254 + CCNA_01182 0.44 -1.2
1,302,262 - CCNA_01182 0.45 -0.5
1,302,296 + CCNA_01182 0.51 -2.2
1,302,296 - CCNA_01182 0.51 -0.7
1,302,298 + CCNA_01182 0.51 -1.4
1,302,298 + CCNA_01182 0.51 -1.9
1,302,305 + CCNA_01182 0.53 -0.7
1,302,306 - CCNA_01182 0.53 -2.6
1,302,310 + CCNA_01182 0.53 -2.4
1,302,340 + CCNA_01182 0.58 -2.4
1,302,346 - CCNA_01182 0.59 -2.4
1,302,346 - CCNA_01182 0.59 -0.6
1,302,347 - CCNA_01182 0.60 +0.9
1,302,366 + CCNA_01182 0.63 -0.5
1,302,366 + CCNA_01182 0.63 -1.5
1,302,374 - CCNA_01182 0.64 +1.5
1,302,374 - CCNA_01182 0.64 -1.4
1,302,374 - CCNA_01182 0.64 -1.5
1,302,374 - CCNA_01182 0.64 +1.1
1,302,412 + CCNA_01182 0.71 +1.1
1,302,412 + CCNA_01182 0.71 -1.9
1,302,412 + CCNA_01182 0.71 -0.8
1,302,417 + CCNA_01182 0.71 -0.9
1,302,420 - CCNA_01182 0.72 -1.5
1,302,422 - CCNA_01182 0.72 -2.3
1,302,432 - CCNA_01182 0.74 -0.1
1,302,458 - CCNA_01182 0.78 -1.9
1,302,485 + CCNA_01182 0.83 -0.1
1,302,485 + CCNA_01182 0.83 -0.5
1,302,485 + CCNA_01182 0.83 -0.7
1,302,485 + CCNA_01182 0.83 -0.5
1,302,485 + CCNA_01182 0.83 -1.9
1,302,485 + CCNA_01182 0.83 +0.6
1,302,485 + CCNA_01182 0.83 +0.5
1,302,487 - CCNA_01182 0.83 -1.4
1,302,493 - CCNA_01182 0.84 +0.9
1,302,493 - CCNA_01182 0.84 +0.7
1,302,493 - CCNA_01182 0.84 -0.6
1,302,493 - CCNA_01182 0.84 +1.5
1,302,493 - CCNA_01182 0.84 +1.3
1,302,493 - CCNA_01182 0.84 -0.1
1,302,493 - CCNA_01182 0.84 +0.1
1,302,493 - CCNA_01182 0.84 -0.1
1,302,493 - CCNA_01182 0.84 +0.1
1,302,511 - CCNA_01182 0.87 +0.5
1,302,521 + CCNA_01182 0.89 -0.8
1,302,537 - +1.5
1,302,550 + +1.1
1,302,567 - +0.1
1,302,602 - -0.7
1,302,656 - -0.1
1,302,676 + -1.1
1,302,676 + +4.0
1,302,684 - +2.5
1,302,684 - +1.3
1,302,684 - +0.1
1,302,684 - +0.2
1,302,686 - +0.1
1,302,687 + +1.3
1,302,704 - +0.5
1,302,740 - CCNA_01183 0.13 +2.2
1,302,759 + CCNA_01183 0.15 +1.3
1,302,815 + CCNA_01183 0.20 -0.8
1,302,816 + CCNA_01183 0.21 -0.5
1,302,839 + CCNA_01183 0.23 +0.7
1,302,839 + CCNA_01183 0.23 -2.2
1,302,872 + CCNA_01183 0.26 -1.4
1,302,907 - CCNA_01183 0.29 -0.1
1,302,935 + CCNA_01183 0.32 -0.4
1,302,935 + CCNA_01183 0.32 -0.7
1,302,935 + CCNA_01183 0.32 -0.4
1,302,935 + CCNA_01183 0.32 +0.7
1,302,935 + CCNA_01183 0.32 -0.4
1,302,937 + CCNA_01183 0.32 +0.2
1,302,937 + CCNA_01183 0.32 -0.3
1,302,937 + CCNA_01183 0.32 +0.5
1,302,939 + CCNA_01183 0.32 +1.2
1,302,943 - CCNA_01183 0.33 -0.8
1,302,945 - CCNA_01183 0.33 +1.2
1,302,945 - CCNA_01183 0.33 +0.6
1,302,972 + CCNA_01183 0.36 +0.1
1,302,980 - CCNA_01183 0.36 -1.5
1,302,980 - CCNA_01183 0.36 -1.9
1,302,980 - CCNA_01183 0.36 -0.1
1,303,014 + CCNA_01183 0.40 -0.8
1,303,025 + CCNA_01183 0.41 +1.5
1,303,063 + CCNA_01183 0.45 +0.4
1,303,083 + CCNA_01183 0.46 -0.6
1,303,099 + CCNA_01183 0.48 +1.2
1,303,107 - CCNA_01183 0.49 +0.7
1,303,107 - CCNA_01183 0.49 -0.4
1,303,107 - CCNA_01183 0.49 -1.2
1,303,110 + CCNA_01183 0.49 +0.4
1,303,117 - CCNA_01183 0.50 -0.4
1,303,127 - CCNA_01183 0.51 -1.4
1,303,127 - CCNA_01183 0.51 -0.3
1,303,138 + CCNA_01183 0.52 +0.5
1,303,189 + CCNA_01183 0.57 +1.8
1,303,204 + CCNA_01183 0.58 -0.1
1,303,207 - CCNA_01183 0.59 +0.3
1,303,237 + CCNA_01183 0.61 -0.1
1,303,237 + CCNA_01183 0.61 -0.5
1,303,270 + CCNA_01183 0.65 +0.2
1,303,278 - CCNA_01183 0.65 +0.1
1,303,278 - CCNA_01183 0.65 -0.5
1,303,278 - CCNA_01183 0.65 +0.5
1,303,280 + CCNA_01183 0.66 -0.0
1,303,280 + CCNA_01183 0.66 +1.7
1,303,332 + CCNA_01183 0.71 +1.0
1,303,347 - CCNA_01183 0.72 -0.4
1,303,355 + CCNA_01183 0.73 +0.4
1,303,355 + CCNA_01183 0.73 -0.6
1,303,355 + +0.9
1,303,370 + CCNA_01183 0.74 +2.5
1,303,464 + CCNA_01183 0.83 +0.2
1,303,464 - +0.9
1,303,469 + CCNA_01183 0.84 +0.8
1,303,469 + CCNA_01183 0.84 +0.4
1,303,472 - CCNA_01183 0.84 -1.1
1,303,482 - CCNA_01183 0.85 -1.0
1,303,567 + -0.2
1,303,580 + +0.6

Or see this region's nucleotide sequence