Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00911

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00910 and CCNA_00911 are separated by 62 nucleotidesCCNA_00911 and CCNA_00912 overlap by 4 nucleotides CCNA_00910: CCNA_00910 - erythromycin esterase family protein, at 990,076 to 991,266 _00910 CCNA_00911: CCNA_00911 - AAA domain ATPase, at 991,329 to 991,919 _00911 CCNA_00912: CCNA_00912 - beta-lactamase family protein, at 991,916 to 992,983 _00912 Position (kb) 991 992Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 990.364 kb on - strand, within CCNA_00910at 990.388 kb on - strand, within CCNA_00910at 990.390 kb on - strand, within CCNA_00910at 990.438 kb on - strand, within CCNA_00910at 990.466 kb on - strand, within CCNA_00910at 990.466 kb on - strand, within CCNA_00910at 990.477 kb on - strand, within CCNA_00910at 990.501 kb on - strand, within CCNA_00910at 990.501 kb on - strand, within CCNA_00910at 990.508 kb on - strand, within CCNA_00910at 990.544 kb on + strand, within CCNA_00910at 990.547 kb on - strand, within CCNA_00910at 990.594 kb on + strand, within CCNA_00910at 990.651 kb on + strand, within CCNA_00910at 990.651 kb on + strand, within CCNA_00910at 990.651 kb on + strand, within CCNA_00910at 990.651 kb on + strand, within CCNA_00910at 990.656 kb on + strand, within CCNA_00910at 990.659 kb on - strand, within CCNA_00910at 990.659 kb on - strand, within CCNA_00910at 990.659 kb on - strand, within CCNA_00910at 990.661 kb on + strand, within CCNA_00910at 990.661 kb on + strand, within CCNA_00910at 990.661 kb on + strand, within CCNA_00910at 990.661 kb on + strand, within CCNA_00910at 990.661 kb on + strand, within CCNA_00910at 990.664 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.669 kb on - strand, within CCNA_00910at 990.674 kb on + strand, within CCNA_00910at 990.674 kb on + strand, within CCNA_00910at 990.682 kb on - strand, within CCNA_00910at 990.682 kb on - strand, within CCNA_00910at 990.706 kb on + strand, within CCNA_00910at 990.730 kb on + strand, within CCNA_00910at 990.757 kb on - strand, within CCNA_00910at 990.813 kb on - strand, within CCNA_00910at 990.813 kb on - strand, within CCNA_00910at 990.816 kb on + strand, within CCNA_00910at 990.824 kb on + strand, within CCNA_00910at 990.845 kb on - strand, within CCNA_00910at 990.845 kb on - strand, within CCNA_00910at 990.845 kb on - strand, within CCNA_00910at 990.856 kb on + strand, within CCNA_00910at 990.888 kb on - strand, within CCNA_00910at 990.919 kb on + strand, within CCNA_00910at 990.919 kb on + strand, within CCNA_00910at 990.927 kb on - strand, within CCNA_00910at 990.983 kb on + strand, within CCNA_00910at 990.983 kb on + strand, within CCNA_00910at 990.988 kb on + strand, within CCNA_00910at 990.991 kb on - strand, within CCNA_00910at 990.996 kb on - strand, within CCNA_00910at 990.996 kb on - strand, within CCNA_00910at 991.031 kb on + strand, within CCNA_00910at 991.039 kb on - strand, within CCNA_00910at 991.057 kb on + strand, within CCNA_00910at 991.058 kb on + strand, within CCNA_00910at 991.058 kb on + strand, within CCNA_00910at 991.073 kb on + strand, within CCNA_00910at 991.073 kb on + strand, within CCNA_00910at 991.081 kb on - strand, within CCNA_00910at 991.136 kb on + strand, within CCNA_00910at 991.191 kb on - strandat 991.191 kb on - strandat 991.222 kb on - strandat 991.222 kb on - strandat 991.230 kb on + strandat 991.234 kb on - strandat 991.283 kb on - strandat 991.301 kb on - strandat 991.301 kb on - strandat 991.302 kb on - strandat 991.317 kb on + strandat 991.367 kb on - strandat 991.406 kb on - strand, within CCNA_00911at 991.406 kb on - strand, within CCNA_00911at 991.406 kb on - strand, within CCNA_00911at 991.406 kb on - strand, within CCNA_00911at 991.408 kb on + strand, within CCNA_00911at 991.415 kb on - strand, within CCNA_00911at 991.427 kb on + strand, within CCNA_00911at 991.437 kb on + strand, within CCNA_00911at 991.438 kb on - strand, within CCNA_00911at 991.438 kb on - strand, within CCNA_00911at 991.445 kb on - strand, within CCNA_00911at 991.448 kb on + strand, within CCNA_00911at 991.487 kb on + strandat 991.494 kb on + strand, within CCNA_00911at 991.581 kb on + strand, within CCNA_00911at 991.623 kb on + strand, within CCNA_00911at 991.665 kb on + strand, within CCNA_00911at 991.673 kb on + strand, within CCNA_00911at 991.702 kb on - strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.705 kb on + strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strandat 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.713 kb on - strand, within CCNA_00911at 991.729 kb on + strand, within CCNA_00911at 991.787 kb on + strand, within CCNA_00911at 991.833 kb on + strand, within CCNA_00911at 991.834 kb on + strand, within CCNA_00911at 991.836 kb on - strand, within CCNA_00911at 991.877 kb on + strandat 991.905 kb on - strandat 991.941 kb on + strandat 991.949 kb on - strandat 991.949 kb on - strandat 991.969 kb on + strandat 991.969 kb on + strandat 991.969 kb on + strandat 991.969 kb on + strandat 991.969 kb on + strandat 991.977 kb on - strandat 991.977 kb on - strandat 991.977 kb on - strandat 991.977 kb on - strandat 991.977 kb on - strandat 991.977 kb on - strandat 991.977 kb on - strandat 991.977 kb on - strandat 991.997 kb on - strandat 992.008 kb on + strandat 992.031 kb on + strand, within CCNA_00912at 992.039 kb on - strand, within CCNA_00912at 992.062 kb on - strand, within CCNA_00912at 992.107 kb on - strand, within CCNA_00912at 992.160 kb on + strand, within CCNA_00912at 992.166 kb on - strand, within CCNA_00912at 992.198 kb on - strand, within CCNA_00912at 992.227 kb on - strand, within CCNA_00912at 992.244 kb on + strand, within CCNA_00912at 992.284 kb on - strand, within CCNA_00912at 992.296 kb on - strand, within CCNA_00912at 992.314 kb on - strand, within CCNA_00912at 992.349 kb on + strand, within CCNA_00912at 992.349 kb on + strand, within CCNA_00912at 992.349 kb on + strand, within CCNA_00912at 992.349 kb on + strand, within CCNA_00912at 992.357 kb on - strand, within CCNA_00912at 992.357 kb on - strand, within CCNA_00912at 992.357 kb on - strand, within CCNA_00912at 992.357 kb on - strand, within CCNA_00912at 992.357 kb on - strand, within CCNA_00912at 992.416 kb on - strand, within CCNA_00912at 992.444 kb on - strand, within CCNA_00912at 992.446 kb on - strand, within CCNA_00912at 992.469 kb on + strand, within CCNA_00912at 992.485 kb on + strand, within CCNA_00912at 992.485 kb on + strand, within CCNA_00912at 992.485 kb on + strand, within CCNA_00912at 992.487 kb on - strand, within CCNA_00912at 992.493 kb on - strand, within CCNA_00912at 992.517 kb on + strand, within CCNA_00912at 992.536 kb on + strand, within CCNA_00912at 992.543 kb on - strand, within CCNA_00912at 992.587 kb on - strand, within CCNA_00912at 992.589 kb on - strand, within CCNA_00912at 992.626 kb on - strand, within CCNA_00912at 992.626 kb on - strand, within CCNA_00912at 992.639 kb on + strand, within CCNA_00912at 992.640 kb on + strand, within CCNA_00912at 992.640 kb on + strand, within CCNA_00912at 992.640 kb on + strand, within CCNA_00912at 992.640 kb on + strand, within CCNA_00912at 992.640 kb on + strand, within CCNA_00912at 992.647 kb on - strand, within CCNA_00912at 992.648 kb on - strand, within CCNA_00912at 992.648 kb on - strand, within CCNA_00912at 992.648 kb on - strand, within CCNA_00912at 992.648 kb on - strand, within CCNA_00912at 992.648 kb on - strand, within CCNA_00912at 992.657 kb on - strand, within CCNA_00912at 992.691 kb on + strand, within CCNA_00912at 992.699 kb on - strand, within CCNA_00912at 992.783 kb on - strand, within CCNA_00912at 992.828 kb on + strand, within CCNA_00912at 992.841 kb on - strand, within CCNA_00912at 992.860 kb on + strand, within CCNA_00912at 992.863 kb on - strand, within CCNA_00912at 992.868 kb on - strand, within CCNA_00912at 992.868 kb on - strand, within CCNA_00912at 992.868 kb on - strand, within CCNA_00912at 992.883 kb on - strandat 992.888 kb on + strandat 992.903 kb on + strandat 992.911 kb on - strandat 992.912 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
990,364 - CCNA_00910 0.24 +1.2
990,388 - CCNA_00910 0.26 +1.5
990,390 - CCNA_00910 0.26 -1.2
990,438 - CCNA_00910 0.30 -2.4
990,466 - CCNA_00910 0.33 -1.1
990,466 - CCNA_00910 0.33 -0.8
990,477 - CCNA_00910 0.34 -1.0
990,501 - CCNA_00910 0.36 +0.7
990,501 - CCNA_00910 0.36 -0.4
990,508 - CCNA_00910 0.36 +0.9
990,544 + CCNA_00910 0.39 -1.4
990,547 - CCNA_00910 0.40 -1.0
990,594 + CCNA_00910 0.43 -0.5
990,651 + CCNA_00910 0.48 +0.6
990,651 + CCNA_00910 0.48 +0.1
990,651 + CCNA_00910 0.48 -1.5
990,651 + CCNA_00910 0.48 -0.1
990,656 + CCNA_00910 0.49 +1.7
990,659 - CCNA_00910 0.49 +1.5
990,659 - CCNA_00910 0.49 +0.5
990,659 - CCNA_00910 0.49 +2.8
990,661 + CCNA_00910 0.49 -0.7
990,661 + CCNA_00910 0.49 +0.5
990,661 + CCNA_00910 0.49 -2.8
990,661 + CCNA_00910 0.49 -0.5
990,661 + CCNA_00910 0.49 +0.2
990,664 - CCNA_00910 0.49 -2.2
990,669 - CCNA_00910 0.50 -0.7
990,669 - CCNA_00910 0.50 -2.4
990,669 - CCNA_00910 0.50 -0.4
990,669 - CCNA_00910 0.50 +1.5
990,669 - CCNA_00910 0.50 +0.1
990,669 - CCNA_00910 0.50 +0.5
990,669 - CCNA_00910 0.50 +0.2
990,669 - CCNA_00910 0.50 +0.5
990,669 - CCNA_00910 0.50 -1.0
990,669 - CCNA_00910 0.50 +1.3
990,669 - CCNA_00910 0.50 +0.9
990,669 - CCNA_00910 0.50 -0.1
990,669 - CCNA_00910 0.50 -2.5
990,669 - CCNA_00910 0.50 -2.5
990,669 - CCNA_00910 0.50 +0.0
990,674 + CCNA_00910 0.50 +0.6
990,674 + CCNA_00910 0.50 +0.5
990,682 - CCNA_00910 0.51 +2.0
990,682 - CCNA_00910 0.51 -1.5
990,706 + CCNA_00910 0.53 -1.0
990,730 + CCNA_00910 0.55 +0.5
990,757 - CCNA_00910 0.57 -0.0
990,813 - CCNA_00910 0.62 -0.7
990,813 - CCNA_00910 0.62 +0.5
990,816 + CCNA_00910 0.62 +1.5
990,824 + CCNA_00910 0.63 +0.6
990,845 - CCNA_00910 0.65 -1.5
990,845 - CCNA_00910 0.65 -1.1
990,845 - CCNA_00910 0.65 -1.5
990,856 + CCNA_00910 0.65 -1.0
990,888 - CCNA_00910 0.68 +0.5
990,919 + CCNA_00910 0.71 -2.0
990,919 + CCNA_00910 0.71 -0.7
990,927 - CCNA_00910 0.71 +1.5
990,983 + CCNA_00910 0.76 +1.3
990,983 + CCNA_00910 0.76 -1.4
990,988 + CCNA_00910 0.77 -1.2
990,991 - CCNA_00910 0.77 -0.8
990,996 - CCNA_00910 0.77 -1.4
990,996 - CCNA_00910 0.77 -0.6
991,031 + CCNA_00910 0.80 +2.5
991,039 - CCNA_00910 0.81 -0.2
991,057 + CCNA_00910 0.82 -0.5
991,058 + CCNA_00910 0.82 -1.0
991,058 + CCNA_00910 0.82 -0.4
991,073 + CCNA_00910 0.84 +0.1
991,073 + CCNA_00910 0.84 +0.5
991,081 - CCNA_00910 0.84 +0.2
991,136 + CCNA_00910 0.89 -0.5
991,191 - +1.5
991,191 - -0.7
991,222 - -1.7
991,222 - -0.1
991,230 + -0.1
991,234 - +0.1
991,283 - -2.2
991,301 - -1.1
991,301 - +0.5
991,302 - -2.6
991,317 + -1.5
991,367 - -0.4
991,406 - CCNA_00911 0.13 -1.7
991,406 - CCNA_00911 0.13 -0.5
991,406 - CCNA_00911 0.13 +1.1
991,406 - CCNA_00911 0.13 -0.4
991,408 + CCNA_00911 0.13 -0.4
991,415 - CCNA_00911 0.15 -2.4
991,427 + CCNA_00911 0.17 -0.9
991,437 + CCNA_00911 0.18 -2.3
991,438 - CCNA_00911 0.18 -0.7
991,438 - CCNA_00911 0.18 -1.4
991,445 - CCNA_00911 0.20 -1.1
991,448 + CCNA_00911 0.20 -1.0
991,487 + +2.5
991,494 + CCNA_00911 0.28 -2.3
991,581 + CCNA_00911 0.43 -1.4
991,623 + CCNA_00911 0.50 +1.5
991,665 + CCNA_00911 0.57 -1.4
991,673 + CCNA_00911 0.58 -1.9
991,702 - CCNA_00911 0.63 +0.3
991,705 + CCNA_00911 0.64 -1.4
991,705 + CCNA_00911 0.64 -1.9
991,705 + CCNA_00911 0.64 +0.5
991,705 + CCNA_00911 0.64 -1.0
991,705 + CCNA_00911 0.64 +1.3
991,705 + CCNA_00911 0.64 -0.4
991,705 + CCNA_00911 0.64 -0.3
991,705 + CCNA_00911 0.64 -1.5
991,705 + CCNA_00911 0.64 +0.4
991,705 + CCNA_00911 0.64 -2.2
991,705 + CCNA_00911 0.64 -0.7
991,705 + CCNA_00911 0.64 +0.2
991,705 + CCNA_00911 0.64 -1.7
991,705 + CCNA_00911 0.64 +1.1
991,705 + CCNA_00911 0.64 -0.9
991,705 + CCNA_00911 0.64 -0.5
991,705 + CCNA_00911 0.64 -0.9
991,705 + CCNA_00911 0.64 -0.1
991,705 + CCNA_00911 0.64 -0.8
991,705 + CCNA_00911 0.64 +0.3
991,713 - CCNA_00911 0.65 -1.0
991,713 - CCNA_00911 0.65 -0.1
991,713 - CCNA_00911 0.65 -0.6
991,713 - CCNA_00911 0.65 +0.9
991,713 - CCNA_00911 0.65 -0.9
991,713 - CCNA_00911 0.65 -2.4
991,713 - CCNA_00911 0.65 +1.5
991,713 - CCNA_00911 0.65 +1.9
991,713 - CCNA_00911 0.65 +0.5
991,713 - +0.1
991,713 - CCNA_00911 0.65 -0.0
991,713 - CCNA_00911 0.65 +1.1
991,713 - CCNA_00911 0.65 -1.0
991,713 - CCNA_00911 0.65 -0.1
991,713 - CCNA_00911 0.65 -1.0
991,713 - CCNA_00911 0.65 -0.8
991,713 - CCNA_00911 0.65 +1.5
991,729 + CCNA_00911 0.68 -0.9
991,787 + CCNA_00911 0.77 -1.4
991,833 + CCNA_00911 0.85 +0.2
991,834 + CCNA_00911 0.85 -0.5
991,836 - CCNA_00911 0.86 +0.5
991,877 + -0.1
991,905 - -0.6
991,941 + -1.4
991,949 - -1.8
991,949 - -0.1
991,969 + -1.4
991,969 + +0.1
991,969 + +0.0
991,969 + -1.2
991,969 + +1.4
991,977 - +1.1
991,977 - +0.9
991,977 - +0.6
991,977 - -1.8
991,977 - -0.0
991,977 - +2.0
991,977 - +1.5
991,977 - +0.6
991,997 - +1.1
992,008 + +2.5
992,031 + CCNA_00912 0.11 -0.4
992,039 - CCNA_00912 0.12 -2.8
992,062 - CCNA_00912 0.14 +0.7
992,107 - CCNA_00912 0.18 +0.9
992,160 + CCNA_00912 0.23 -2.1
992,166 - CCNA_00912 0.23 -1.0
992,198 - CCNA_00912 0.26 +0.1
992,227 - CCNA_00912 0.29 +0.9
992,244 + CCNA_00912 0.31 -0.4
992,284 - CCNA_00912 0.34 -0.1
992,296 - CCNA_00912 0.36 -0.1
992,314 - CCNA_00912 0.37 -1.9
992,349 + CCNA_00912 0.41 +1.3
992,349 + CCNA_00912 0.41 -0.5
992,349 + CCNA_00912 0.41 -0.5
992,349 + CCNA_00912 0.41 -0.7
992,357 - CCNA_00912 0.41 +1.5
992,357 - CCNA_00912 0.41 +0.6
992,357 - CCNA_00912 0.41 -0.9
992,357 - CCNA_00912 0.41 -1.0
992,357 - CCNA_00912 0.41 -2.2
992,416 - CCNA_00912 0.47 -0.0
992,444 - CCNA_00912 0.49 -0.7
992,446 - CCNA_00912 0.50 -0.4
992,469 + CCNA_00912 0.52 -1.5
992,485 + CCNA_00912 0.53 +0.5
992,485 + CCNA_00912 0.53 -1.0
992,485 + CCNA_00912 0.53 -2.8
992,487 - CCNA_00912 0.53 +0.1
992,493 - CCNA_00912 0.54 +0.9
992,517 + CCNA_00912 0.56 +3.8
992,536 + CCNA_00912 0.58 -1.0
992,543 - CCNA_00912 0.59 -0.4
992,587 - CCNA_00912 0.63 -0.2
992,589 - CCNA_00912 0.63 -0.9
992,626 - CCNA_00912 0.66 -0.4
992,626 - CCNA_00912 0.66 +0.9
992,639 + CCNA_00912 0.68 +0.3
992,640 + CCNA_00912 0.68 -1.2
992,640 + CCNA_00912 0.68 -1.8
992,640 + CCNA_00912 0.68 -1.4
992,640 + CCNA_00912 0.68 +0.3
992,640 + CCNA_00912 0.68 +0.9
992,647 - CCNA_00912 0.68 -1.5
992,648 - CCNA_00912 0.69 -1.1
992,648 - CCNA_00912 0.69 +0.1
992,648 - CCNA_00912 0.69 +4.0
992,648 - CCNA_00912 0.69 -1.2
992,648 - CCNA_00912 0.69 +0.9
992,657 - CCNA_00912 0.69 -0.9
992,691 + CCNA_00912 0.73 +0.3
992,699 - CCNA_00912 0.73 +0.9
992,783 - CCNA_00912 0.81 +2.0
992,828 + CCNA_00912 0.85 -0.3
992,841 - CCNA_00912 0.87 -0.7
992,860 + CCNA_00912 0.88 -1.2
992,863 - CCNA_00912 0.89 +0.1
992,868 - CCNA_00912 0.89 +1.2
992,868 - CCNA_00912 0.89 -3.3
992,868 - CCNA_00912 0.89 +1.0
992,883 - +1.7
992,888 + +1.3
992,903 + -1.5
992,911 - +0.6
992,912 + -0.9

Or see this region's nucleotide sequence