Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00091 and CCNA_00092 overlap by 4 nucleotides CCNA_00092 and CCNA_00093 are separated by 98 nucleotides CCNA_00093 and CCNA_00094 are separated by 72 nucleotides
CCNA_00091: CCNA_00091 - transporter, drug/metabolite exporter family, at 103,149 to 104,042
_00091
CCNA_00092: CCNA_00092 - short chain dehydrogenase, at 104,039 to 104,929
_00092
CCNA_00093: CCNA_00093 - hypothetical protein, at 105,028 to 105,237
_00093
CCNA_00094: CCNA_00094 - WecG/TagA-family glycosyltransferase HfsJ, at 105,310 to 106,230
_00094
Position (kb) 104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 103.052 kb on + strand at 103.146 kb on + strand at 103.170 kb on - strand at 103.198 kb on + strand at 103.198 kb on + strand at 103.206 kb on - strand at 103.206 kb on - strand at 103.208 kb on + strand at 103.208 kb on - strand at 103.216 kb on - strand at 103.216 kb on - strand at 103.226 kb on + strand at 103.261 kb on + strand, within CCNA_00091 at 103.269 kb on - strand, within CCNA_00091 at 103.296 kb on + strand, within CCNA_00091 at 103.342 kb on - strand, within CCNA_00091 at 103.401 kb on + strand, within CCNA_00091 at 103.430 kb on - strand, within CCNA_00091 at 103.459 kb on + strand, within CCNA_00091 at 103.478 kb on + strand, within CCNA_00091 at 103.483 kb on + strand, within CCNA_00091 at 103.491 kb on - strand, within CCNA_00091 at 103.491 kb on - strand, within CCNA_00091 at 103.491 kb on - strand, within CCNA_00091 at 103.519 kb on + strand, within CCNA_00091 at 103.550 kb on - strand, within CCNA_00091 at 103.568 kb on + strand, within CCNA_00091 at 103.580 kb on + strand, within CCNA_00091 at 103.586 kb on - strand, within CCNA_00091 at 103.586 kb on - strand, within CCNA_00091 at 103.586 kb on - strand, within CCNA_00091 at 103.586 kb on - strand, within CCNA_00091 at 103.586 kb on - strand, within CCNA_00091 at 103.589 kb on + strand, within CCNA_00091 at 103.607 kb on - strand, within CCNA_00091 at 103.632 kb on + strand, within CCNA_00091 at 103.653 kb on + strand, within CCNA_00091 at 103.656 kb on - strand, within CCNA_00091 at 103.671 kb on - strand, within CCNA_00091 at 103.676 kb on - strand, within CCNA_00091 at 103.697 kb on + strand, within CCNA_00091 at 103.697 kb on + strand, within CCNA_00091 at 103.705 kb on - strand, within CCNA_00091 at 103.705 kb on - strand, within CCNA_00091 at 103.705 kb on - strand, within CCNA_00091 at 103.715 kb on + strand, within CCNA_00091 at 103.728 kb on - strand, within CCNA_00091 at 103.747 kb on + strand, within CCNA_00091 at 103.788 kb on - strand, within CCNA_00091 at 103.789 kb on + strand, within CCNA_00091 at 103.797 kb on - strand, within CCNA_00091 at 103.849 kb on + strand, within CCNA_00091 at 103.916 kb on + strand, within CCNA_00091 at 103.923 kb on + strand, within CCNA_00091 at 103.931 kb on - strand, within CCNA_00091 at 103.957 kb on + strand at 103.975 kb on - strand at 103.979 kb on - strand at 103.991 kb on + strand at 103.999 kb on - strand at 104.024 kb on + strand at 104.024 kb on + strand at 104.024 kb on + strand at 104.032 kb on - strand at 104.032 kb on - strand at 104.032 kb on - strand at 104.032 kb on - strand at 104.032 kb on - strand at 104.044 kb on - strand at 104.140 kb on + strand, within CCNA_00092 at 104.148 kb on - strand, within CCNA_00092 at 104.148 kb on - strand, within CCNA_00092 at 104.155 kb on + strand, within CCNA_00092 at 104.155 kb on + strand, within CCNA_00092 at 104.163 kb on + strand, within CCNA_00092 at 104.194 kb on - strand, within CCNA_00092 at 104.225 kb on + strand, within CCNA_00092 at 104.228 kb on - strand, within CCNA_00092 at 104.374 kb on + strand, within CCNA_00092 at 104.382 kb on - strand, within CCNA_00092 at 104.388 kb on + strand, within CCNA_00092 at 104.409 kb on + strand, within CCNA_00092 at 104.466 kb on + strand, within CCNA_00092 at 104.466 kb on + strand, within CCNA_00092 at 104.474 kb on - strand, within CCNA_00092 at 104.479 kb on + strand, within CCNA_00092 at 104.551 kb on + strand, within CCNA_00092 at 104.594 kb on - strand, within CCNA_00092 at 104.604 kb on + strand, within CCNA_00092 at 104.604 kb on + strand, within CCNA_00092 at 104.612 kb on - strand, within CCNA_00092 at 104.629 kb on + strand, within CCNA_00092 at 104.637 kb on - strand, within CCNA_00092 at 104.669 kb on + strand, within CCNA_00092 at 104.710 kb on + strand at 104.710 kb on + strand, within CCNA_00092 at 104.711 kb on + strand, within CCNA_00092 at 104.718 kb on + strand, within CCNA_00092 at 104.720 kb on - strand, within CCNA_00092 at 104.720 kb on - strand, within CCNA_00092 at 104.726 kb on - strand, within CCNA_00092 at 104.726 kb on - strand, within CCNA_00092 at 104.745 kb on + strand at 104.745 kb on + strand, within CCNA_00092 at 104.763 kb on - strand, within CCNA_00092 at 104.770 kb on + strand, within CCNA_00092 at 104.770 kb on + strand, within CCNA_00092 at 104.778 kb on - strand, within CCNA_00092 at 104.785 kb on + strand, within CCNA_00092 at 104.785 kb on + strand, within CCNA_00092 at 104.793 kb on - strand, within CCNA_00092 at 104.823 kb on - strand, within CCNA_00092 at 104.832 kb on + strand, within CCNA_00092 at 104.854 kb on + strand at 104.862 kb on - strand at 104.893 kb on - strand at 104.920 kb on - strand at 104.944 kb on + strand at 104.946 kb on + strand at 105.001 kb on - strand at 105.020 kb on - strand at 105.048 kb on - strand at 105.090 kb on + strand, within CCNA_00093 at 105.106 kb on + strand, within CCNA_00093 at 105.117 kb on + strand, within CCNA_00093 at 105.125 kb on - strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.136 kb on + strand, within CCNA_00093 at 105.136 kb on + strand, within CCNA_00093 at 105.139 kb on - strand, within CCNA_00093 at 105.139 kb on - strand, within CCNA_00093 at 105.141 kb on + strand, within CCNA_00093 at 105.141 kb on + strand, within CCNA_00093 at 105.144 kb on - strand, within CCNA_00093 at 105.144 kb on - strand, within CCNA_00093 at 105.149 kb on - strand, within CCNA_00093 at 105.156 kb on + strand, within CCNA_00093 at 105.159 kb on - strand, within CCNA_00093 at 105.164 kb on - strand, within CCNA_00093 at 105.164 kb on - strand, within CCNA_00093 at 105.189 kb on - strand, within CCNA_00093 at 105.205 kb on - strand, within CCNA_00093 at 105.242 kb on + strand at 105.250 kb on - strand at 105.266 kb on + strand at 105.297 kb on - strand at 105.320 kb on + strand at 105.332 kb on + strand at 105.337 kb on + strand at 105.345 kb on - strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.399 kb on - strand at 105.433 kb on - strand, within CCNA_00094 at 105.502 kb on + strand at 105.511 kb on - strand, within CCNA_00094 at 105.524 kb on - strand, within CCNA_00094 at 105.524 kb on - strand, within CCNA_00094 at 105.524 kb on - strand, within CCNA_00094 at 105.526 kb on + strand, within CCNA_00094 at 105.546 kb on - strand, within CCNA_00094 at 105.604 kb on - strand, within CCNA_00094 at 105.610 kb on - strand, within CCNA_00094 at 105.628 kb on - strand, within CCNA_00094 at 105.642 kb on + strand, within CCNA_00094 at 105.642 kb on + strand, within CCNA_00094 at 105.660 kb on - strand, within CCNA_00094 at 105.665 kb on - strand, within CCNA_00094 at 105.672 kb on - strand, within CCNA_00094 at 105.703 kb on + strand, within CCNA_00094 at 105.703 kb on + strand, within CCNA_00094 at 105.723 kb on - strand, within CCNA_00094 at 105.723 kb on - strand, within CCNA_00094 at 105.746 kb on + strand, within CCNA_00094 at 105.769 kb on + strand, within CCNA_00094 at 105.769 kb on + strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.804 kb on + strand, within CCNA_00094 at 105.833 kb on + strand, within CCNA_00094 at 105.850 kb on + strand, within CCNA_00094 at 105.855 kb on + strand, within CCNA_00094 at 105.858 kb on - strand, within CCNA_00094 at 105.858 kb on - strand, within CCNA_00094 at 105.858 kb on - strand, within CCNA_00094 at 105.877 kb on + strand, within CCNA_00094 at 105.882 kb on + strand, within CCNA_00094 at 105.884 kb on - strand, within CCNA_00094 at 105.885 kb on - strand, within CCNA_00094 at 105.887 kb on + strand, within CCNA_00094
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 103,052 + -2.1 103,146 + -0.5 103,170 - +0.9 103,198 + +0.9 103,198 + +0.5 103,206 - -1.1 103,206 - -0.7 103,208 + -1.5 103,208 - -1.2 103,216 - -2.2 103,216 - -1.2 103,226 + +2.1 103,261 + CCNA_00091 0.13 +1.1 103,269 - CCNA_00091 0.13 +0.2 103,296 + CCNA_00091 0.16 +0.6 103,342 - CCNA_00091 0.22 -0.3 103,401 + CCNA_00091 0.28 +0.1 103,430 - CCNA_00091 0.31 -1.8 103,459 + CCNA_00091 0.35 +0.3 103,478 + CCNA_00091 0.37 -0.7 103,483 + CCNA_00091 0.37 +0.2 103,491 - CCNA_00091 0.38 +2.0 103,491 - CCNA_00091 0.38 -0.1 103,491 - CCNA_00091 0.38 -0.8 103,519 + CCNA_00091 0.41 +0.5 103,550 - CCNA_00091 0.45 -1.1 103,568 + CCNA_00091 0.47 -2.3 103,580 + CCNA_00091 0.48 +0.1 103,586 - CCNA_00091 0.49 -0.4 103,586 - CCNA_00091 0.49 +0.4 103,586 - CCNA_00091 0.49 +0.4 103,586 - CCNA_00091 0.49 -0.6 103,586 - CCNA_00091 0.49 +0.2 103,589 + CCNA_00091 0.49 +0.0 103,607 - CCNA_00091 0.51 -0.5 103,632 + CCNA_00091 0.54 +0.2 103,653 + CCNA_00091 0.56 -0.6 103,656 - CCNA_00091 0.57 +0.2 103,671 - CCNA_00091 0.58 +2.0 103,676 - CCNA_00091 0.59 +1.4 103,697 + CCNA_00091 0.61 -0.6 103,697 + CCNA_00091 0.61 -0.6 103,705 - CCNA_00091 0.62 -0.7 103,705 - CCNA_00091 0.62 -2.8 103,705 - CCNA_00091 0.62 +0.0 103,715 + CCNA_00091 0.63 -1.2 103,728 - CCNA_00091 0.65 -0.2 103,747 + CCNA_00091 0.67 -0.1 103,788 - CCNA_00091 0.71 -1.8 103,789 + CCNA_00091 0.72 +0.3 103,797 - CCNA_00091 0.72 -0.6 103,849 + CCNA_00091 0.78 -1.9 103,916 + CCNA_00091 0.86 -2.6 103,923 + CCNA_00091 0.87 +0.4 103,931 - CCNA_00091 0.87 +0.8 103,957 + +0.5 103,975 - -1.5 103,979 - +0.6 103,991 + -1.1 103,999 - +0.3 104,024 + -2.1 104,024 + +0.9 104,024 + -0.3 104,032 - +0.3 104,032 - +0.6 104,032 - +0.5 104,032 - -0.4 104,032 - +0.5 104,044 - -0.8 104,140 + CCNA_00092 0.11 -2.3 104,148 - CCNA_00092 0.12 +0.5 104,148 - CCNA_00092 0.12 -0.2 104,155 + CCNA_00092 0.13 +1.9 104,155 + CCNA_00092 0.13 +1.5 104,163 + CCNA_00092 0.14 +0.5 104,194 - CCNA_00092 0.17 -0.4 104,225 + CCNA_00092 0.21 -0.6 104,228 - CCNA_00092 0.21 -0.5 104,374 + CCNA_00092 0.38 -0.2 104,382 - CCNA_00092 0.38 -0.4 104,388 + CCNA_00092 0.39 -2.1 104,409 + CCNA_00092 0.42 +0.5 104,466 + CCNA_00092 0.48 -0.9 104,466 + CCNA_00092 0.48 -1.0 104,474 - CCNA_00092 0.49 -0.8 104,479 + CCNA_00092 0.49 +0.9 104,551 + CCNA_00092 0.57 -1.1 104,594 - CCNA_00092 0.62 -1.5 104,604 + CCNA_00092 0.63 +1.4 104,604 + CCNA_00092 0.63 -1.7 104,612 - CCNA_00092 0.64 +0.2 104,629 + CCNA_00092 0.66 -0.3 104,637 - CCNA_00092 0.67 -0.7 104,669 + CCNA_00092 0.71 -1.5 104,710 + +3.1 104,710 + CCNA_00092 0.75 -0.6 104,711 + CCNA_00092 0.75 -1.3 104,718 + CCNA_00092 0.76 +0.2 104,720 - CCNA_00092 0.76 -1.1 104,720 - CCNA_00092 0.76 -0.8 104,726 - CCNA_00092 0.77 -1.9 104,726 - CCNA_00092 0.77 -0.4 104,745 + +0.5 104,745 + CCNA_00092 0.79 -2.4 104,763 - CCNA_00092 0.81 -0.3 104,770 + CCNA_00092 0.82 +0.7 104,770 + CCNA_00092 0.82 +0.5 104,778 - CCNA_00092 0.83 +2.5 104,785 + CCNA_00092 0.84 -1.9 104,785 + CCNA_00092 0.84 +0.5 104,793 - CCNA_00092 0.85 -3.1 104,823 - CCNA_00092 0.88 -2.3 104,832 + CCNA_00092 0.89 -2.3 104,854 + -0.5 104,862 - -0.8 104,893 - +0.7 104,920 - +1.0 104,944 + -0.1 104,946 + +0.2 105,001 - +0.1 105,020 - +5.0 105,048 - +2.0 105,090 + CCNA_00093 0.30 -1.1 105,106 + CCNA_00093 0.37 +0.2 105,117 + CCNA_00093 0.42 -0.8 105,125 - CCNA_00093 0.46 +0.7 105,131 + CCNA_00093 0.49 -0.7 105,131 + CCNA_00093 0.49 +1.5 105,131 + CCNA_00093 0.49 +0.9 105,131 + CCNA_00093 0.49 +0.5 105,136 + CCNA_00093 0.51 -2.0 105,136 + CCNA_00093 0.51 -0.1 105,139 - CCNA_00093 0.53 +0.9 105,139 - CCNA_00093 0.53 +0.8 105,141 + CCNA_00093 0.54 +0.1 105,141 + CCNA_00093 0.54 -1.5 105,144 - CCNA_00093 0.55 +0.6 105,144 - CCNA_00093 0.55 +1.5 105,149 - CCNA_00093 0.58 -0.3 105,156 + CCNA_00093 0.61 -0.5 105,159 - CCNA_00093 0.62 +0.9 105,164 - CCNA_00093 0.65 -0.4 105,164 - CCNA_00093 0.65 +0.8 105,189 - CCNA_00093 0.77 -1.6 105,205 - CCNA_00093 0.84 -0.3 105,242 + -0.9 105,250 - +0.9 105,266 + -0.1 105,297 - +2.5 105,320 + -0.4 105,332 + +2.5 105,337 + -1.3 105,345 - +0.5 105,389 + -0.8 105,389 + -0.3 105,389 + -0.8 105,389 + -0.6 105,389 + -0.6 105,397 - +0.4 105,397 - +2.0 105,397 - +0.5 105,397 - +0.5 105,397 - +2.3 105,397 - +0.5 105,397 - -0.8 105,399 - +0.1 105,433 - CCNA_00094 0.13 -0.4 105,502 + +0.9 105,511 - CCNA_00094 0.22 +1.4 105,524 - CCNA_00094 0.23 +0.2 105,524 - CCNA_00094 0.23 -0.8 105,524 - CCNA_00094 0.23 +1.2 105,526 + CCNA_00094 0.23 -0.5 105,546 - CCNA_00094 0.26 +0.5 105,604 - CCNA_00094 0.32 +0.9 105,610 - CCNA_00094 0.33 -2.2 105,628 - CCNA_00094 0.35 -0.0 105,642 + CCNA_00094 0.36 -0.3 105,642 + CCNA_00094 0.36 -0.3 105,660 - CCNA_00094 0.38 -0.7 105,665 - CCNA_00094 0.39 +0.3 105,672 - CCNA_00094 0.39 -0.3 105,703 + CCNA_00094 0.43 +1.3 105,703 + CCNA_00094 0.43 -0.9 105,723 - CCNA_00094 0.45 -0.1 105,723 - CCNA_00094 0.45 -0.2 105,746 + CCNA_00094 0.47 +1.7 105,769 + CCNA_00094 0.50 -1.9 105,769 + CCNA_00094 0.50 -1.8 105,777 - CCNA_00094 0.51 +0.8 105,777 - CCNA_00094 0.51 +0.4 105,777 - CCNA_00094 0.51 -1.5 105,777 - CCNA_00094 0.51 +2.1 105,804 + CCNA_00094 0.54 -0.7 105,833 + CCNA_00094 0.57 -2.1 105,850 + CCNA_00094 0.59 -0.0 105,855 + CCNA_00094 0.59 +0.1 105,858 - CCNA_00094 0.60 -0.5 105,858 - CCNA_00094 0.60 +0.5 105,858 - CCNA_00094 0.60 +0.5 105,877 + CCNA_00094 0.62 -0.1 105,882 + CCNA_00094 0.62 -2.3 105,884 - CCNA_00094 0.62 -0.7 105,885 - CCNA_00094 0.62 -0.1 105,887 + CCNA_00094 0.63 -0.0
Or see this region's nucleotide sequence