Experiment: R2A with A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24020 and CA265_RS24025 are separated by 104 nucleotides CA265_RS24025 and CA265_RS24030 are separated by 38 nucleotides CA265_RS24030 and CA265_RS24035 are separated by 98 nucleotides
CA265_RS24020: CA265_RS24020 - apolipoprotein N-acyltransferase, at 5,853,383 to 5,854,999
_RS24020
CA265_RS24025: CA265_RS24025 - hypothetical protein, at 5,855,104 to 5,855,757
_RS24025
CA265_RS24030: CA265_RS24030 - rRNA (cytidine-2'-O-)-methyltransferase, at 5,855,796 to 5,856,509
_RS24030
CA265_RS24035: CA265_RS24035 - serine--tRNA ligase, at 5,856,608 to 5,857,879
_RS24035
Position (kb) 5855
5856 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5855.018 kb on - strand at 5855.046 kb on - strand at 5855.046 kb on - strand at 5855.050 kb on - strand at 5855.133 kb on + strand at 5855.500 kb on - strand, within CA265_RS24025 at 5855.552 kb on - strand, within CA265_RS24025 at 5855.563 kb on - strand, within CA265_RS24025 at 5855.648 kb on - strand, within CA265_RS24025 at 5855.675 kb on - strand, within CA265_RS24025 at 5855.746 kb on + strand at 5855.747 kb on - strand at 5855.758 kb on - strand at 5855.766 kb on + strand at 5855.797 kb on + strand at 5855.879 kb on + strand, within CA265_RS24030 at 5855.955 kb on - strand, within CA265_RS24030 at 5856.040 kb on - strand, within CA265_RS24030 at 5856.095 kb on + strand, within CA265_RS24030 at 5856.219 kb on + strand, within CA265_RS24030 at 5856.295 kb on - strand, within CA265_RS24030 at 5856.305 kb on + strand, within CA265_RS24030 at 5856.359 kb on + strand, within CA265_RS24030 at 5856.360 kb on - strand, within CA265_RS24030 at 5856.418 kb on - strand at 5856.432 kb on + strand, within CA265_RS24030 at 5856.438 kb on - strand at 5856.459 kb on - strand at 5856.495 kb on + strand at 5856.509 kb on + strand at 5856.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.04 mg/ml remove 5,855,018 - +0.2 5,855,046 - +0.4 5,855,046 - +1.1 5,855,050 - +0.5 5,855,133 + -3.0 5,855,500 - CA265_RS24025 0.61 +0.4 5,855,552 - CA265_RS24025 0.69 +0.6 5,855,563 - CA265_RS24025 0.70 +0.1 5,855,648 - CA265_RS24025 0.83 +0.7 5,855,675 - CA265_RS24025 0.87 +0.3 5,855,746 + -3.0 5,855,747 - +0.5 5,855,758 - +0.8 5,855,766 + -2.4 5,855,797 + -2.5 5,855,879 + CA265_RS24030 0.12 -1.8 5,855,955 - CA265_RS24030 0.22 -1.0 5,856,040 - CA265_RS24030 0.34 -0.2 5,856,095 + CA265_RS24030 0.42 +0.0 5,856,219 + CA265_RS24030 0.59 -0.1 5,856,295 - CA265_RS24030 0.70 -0.3 5,856,305 + CA265_RS24030 0.71 -0.9 5,856,359 + CA265_RS24030 0.79 +0.0 5,856,360 - CA265_RS24030 0.79 +1.0 5,856,418 - -1.2 5,856,432 + CA265_RS24030 0.89 -0.7 5,856,438 - +0.0 5,856,459 - +0.0 5,856,495 + -0.1 5,856,509 + -1.0 5,856,510 - +0.5
Or see this region's nucleotide sequence