Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16385

Experiment: R2A with A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.04 mg/ml
4,119,210	+		CA265_RS16380	0.32	+0.3
4,119,239	-		CA265_RS16380	0.34	-0.6
4,119,247	+		CA265_RS16380	0.35	+0.2
4,119,248	-		CA265_RS16380	0.35	+0.6
4,119,256	-		CA265_RS16380	0.36	+1.2
4,119,418	+		CA265_RS16380	0.48	+0.4
4,119,419	-		CA265_RS16380	0.48	+0.8
4,119,494	-		CA265_RS16380	0.53	+0.1
4,119,506	-		CA265_RS16380	0.54	+0.8
4,119,506	-		CA265_RS16380	0.54	+0.0
4,119,524	+		CA265_RS16380	0.56	-0.9
4,119,524	+		CA265_RS16380	0.56	+1.1
4,119,525	-		CA265_RS16380	0.56	+0.7
4,119,584	-		CA265_RS16380	0.60	+0.6
4,119,595	-		CA265_RS16380	0.61	+0.4
4,119,719	+		CA265_RS16380	0.70	+0.7
4,119,720	-		CA265_RS16380	0.70	+0.9
4,119,758	-		CA265_RS16380	0.73	+0.3
4,119,835	+		CA265_RS16380	0.79	+0.7
4,119,911	-		CA265_RS16380	0.84	+0.8
4,119,939	+		CA265_RS16380	0.87	+0.4
4,119,958	+		CA265_RS16380	0.88	+0.6
4,120,014	+				+0.8
4,120,061	-				-0.2
4,120,070	-				-0.4
4,120,091	-				-0.6
4,120,102	-				+0.1
4,120,124	+				+0.5
4,120,232	+				+0.8
4,120,233	-				+0.2
4,120,236	-				+0.6
4,120,236	-				+0.9
4,120,236	-				-0.6
4,120,244	-				+0.1
4,120,269	-				-0.2
4,120,272	+				-0.8
4,120,281	+				-0.3
4,120,282	-				+0.8
4,120,300	-				+0.9
4,120,323	+				+1.2
4,120,324	-				+0.5
4,120,326	-				+0.8
4,120,354	-		CA265_RS16385	0.10	+0.4
4,120,355	+		CA265_RS16385	0.10	+0.9
4,120,355	+		CA265_RS16385	0.10	-0.5
4,120,356	-		CA265_RS16385	0.10	+0.4
4,120,439	-		CA265_RS16385	0.16	+0.6
4,120,463	-		CA265_RS16385	0.18	-1.8
4,120,485	+		CA265_RS16385	0.19	+1.3
4,120,486	-		CA265_RS16385	0.19	+0.5
4,120,507	-		CA265_RS16385	0.21	+0.9
4,120,566	+		CA265_RS16385	0.25	-0.1
4,120,593	-		CA265_RS16385	0.27	+0.8
4,120,600	-		CA265_RS16385	0.27	-0.4
4,120,605	+		CA265_RS16385	0.28	-0.2
4,120,613	-		CA265_RS16385	0.28	+0.5
4,120,734	+		CA265_RS16385	0.37	+0.6
4,120,735	-		CA265_RS16385	0.37	+0.4
4,120,755	+		CA265_RS16385	0.38	+0.4
4,120,812	+		CA265_RS16385	0.42	+2.4
4,120,893	+		CA265_RS16385	0.48	-0.2
4,120,900	-		CA265_RS16385	0.48	+0.0
4,120,904	+		CA265_RS16385	0.48	+0.7
4,121,006	-		CA265_RS16385	0.55	+0.2
4,121,031	+		CA265_RS16385	0.57	+2.7
4,121,032	-		CA265_RS16385	0.57	+0.9
4,121,035	-		CA265_RS16385	0.57	+2.7
4,121,104	+		CA265_RS16385	0.62	+0.2
4,121,147	-		CA265_RS16385	0.65	+0.4
4,121,147	-		CA265_RS16385	0.65	+0.4
4,121,170	+		CA265_RS16385	0.67	+0.0
4,121,171	-		CA265_RS16385	0.67	-0.6
4,121,184	-		CA265_RS16385	0.68	-0.0
4,121,197	-		CA265_RS16385	0.69	-0.5
4,121,198	+		CA265_RS16385	0.69	+0.4
4,121,198	+		CA265_RS16385	0.69	-1.0
4,121,198	+		CA265_RS16385	0.69	+0.0
4,121,332	+		CA265_RS16385	0.78	+0.5
4,121,332	+		CA265_RS16385	0.78	+1.1
4,121,332	+		CA265_RS16385	0.78	+0.1
4,121,394	+		CA265_RS16385	0.82	+0.9
4,121,412	+		CA265_RS16385	0.84	+0.4
4,121,412	+		CA265_RS16385	0.84	-0.1
4,121,414	+		CA265_RS16385	0.84	+0.7
4,121,440	+		CA265_RS16385	0.86	+0.2
4,121,464	+		CA265_RS16385	0.87	+0.1
4,121,464	+		CA265_RS16385	0.87	+0.9
4,121,490	+		CA265_RS16385	0.89	+1.2
4,121,490	+		CA265_RS16385	0.89	+0.6
4,121,523	+				+0.0
4,121,530	-				+0.5
4,121,532	+				+0.0
4,121,532	+				-0.0
4,121,533	-				+0.6
4,121,536	+				+0.3
4,121,537	-				+0.0
4,121,571	+				+1.2
4,121,608	-				-0.3
4,121,620	+				+0.4
4,121,621	-				+0.9
4,121,621	-				+0.7
4,121,665	-				-0.2
4,121,666	+				+0.1
4,121,666	+				+0.0
4,121,677	-				-0.2
4,121,693	-				-0.7
4,121,705	+				+0.3
4,121,761	-				-2.2
4,121,770	+				-1.0
4,121,806	-		CA265_RS16390	0.13	-2.0
4,121,806	-		CA265_RS16390	0.13	-1.1
4,121,828	+		CA265_RS16390	0.16	-1.2
4,121,828	+		CA265_RS16390	0.16	-3.2
4,121,828	+		CA265_RS16390	0.16	-1.6
4,121,910	-		CA265_RS16390	0.28	-1.5
4,121,910	-		CA265_RS16390	0.28	-1.2
4,121,973	-		CA265_RS16390	0.37	-2.6
4,121,987	-		CA265_RS16390	0.39	-3.0
4,122,031	+		CA265_RS16390	0.46	-4.0
4,122,211	+		CA265_RS16390	0.72	-2.0
4,122,211	+		CA265_RS16390	0.72	-1.9
4,122,270	-		CA265_RS16390	0.81	-3.3
4,122,290	+		CA265_RS16390	0.84	-0.9
4,122,292	+		CA265_RS16390	0.84	-2.0
4,122,292	+		CA265_RS16390	0.84	-1.9
4,122,314	-		CA265_RS16390	0.87	-3.3
4,122,337	-				-0.6
4,122,337	-				-2.5
4,122,337	-				-2.1
4,122,360	+				-2.5
4,122,361	-				-1.6
4,122,590	-				-0.6
4,122,607	-				-0.5