Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09855

Experiment: R2A with A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.04 mg/ml
2,428,408	-		CA265_RS09845	0.76	+0.1
2,428,424	+		CA265_RS09845	0.80	+0.9
2,428,425	-		CA265_RS09845	0.80	+0.3
2,428,474	+				-0.1
2,428,475	-				-0.1
2,428,475	-				+0.4
2,428,491	+				-0.0
2,428,493	+				-0.1
2,428,493	+				-0.3
2,428,553	+				+1.1
2,428,582	+				-0.8
2,428,683	-		CA265_RS09850	0.19	+0.5
2,428,709	+		CA265_RS09850	0.23	-0.3
2,428,921	+		CA265_RS09850	0.58	-0.8
2,428,925	+		CA265_RS09850	0.59	-1.4
2,429,007	+		CA265_RS09850	0.73	-0.3
2,429,007	+		CA265_RS09850	0.73	-0.2
2,429,044	+		CA265_RS09850	0.79	-0.2
2,429,088	-		CA265_RS09850	0.86	+0.2
2,429,102	+		CA265_RS09850	0.89	-0.1
2,429,106	-		CA265_RS09850	0.89	+0.4
2,429,152	+				+0.7
2,429,221	+				-0.2
2,429,221	+				+1.0
2,429,251	+				-0.8
2,429,252	-				-0.1
2,429,284	+				-0.2
2,429,385	+				+0.8
2,429,385	+				-1.8
2,429,397	+				+0.3
2,429,397	+				-1.3
2,429,423	+				-0.9
2,429,509	-				-0.6
2,429,538	+				+0.2
2,429,539	-				-0.2
2,429,539	-				+0.5
2,429,630	+		CA265_RS09855	0.15	-1.1
2,429,739	+		CA265_RS09855	0.21	-0.1
2,429,741	+		CA265_RS09855	0.22	-3.3
2,429,850	-		CA265_RS09855	0.28	-2.3
2,429,874	-		CA265_RS09855	0.30	-0.0
2,429,945	+		CA265_RS09855	0.34	-1.2
2,429,973	+		CA265_RS09855	0.36	-0.4
2,430,106	+		CA265_RS09855	0.44	-0.8
2,430,106	+		CA265_RS09855	0.44	-1.1
2,430,110	-		CA265_RS09855	0.44	-0.8
2,430,124	-		CA265_RS09855	0.45	-0.3
2,430,127	+		CA265_RS09855	0.46	-1.1
2,430,128	-		CA265_RS09855	0.46	-0.5
2,430,128	-		CA265_RS09855	0.46	-1.1
2,430,145	+		CA265_RS09855	0.47	-0.6
2,430,146	-		CA265_RS09855	0.47	-0.3
2,430,213	+		CA265_RS09855	0.51	-0.3
2,430,214	-		CA265_RS09855	0.51	-0.4
2,430,214	-		CA265_RS09855	0.51	-0.4
2,430,215	+		CA265_RS09855	0.51	-0.8
2,430,215	+		CA265_RS09855	0.51	-2.5
2,430,216	-		CA265_RS09855	0.51	-0.5
2,430,280	-		CA265_RS09855	0.55	-0.0
2,430,315	+		CA265_RS09855	0.57	-0.5
2,430,316	-		CA265_RS09855	0.57	-0.7
2,430,357	+		CA265_RS09855	0.60	-0.8
2,430,358	-		CA265_RS09855	0.60	-0.5
2,430,358	-		CA265_RS09855	0.60	-1.0
2,430,358	-		CA265_RS09855	0.60	-0.3
2,430,358	-		CA265_RS09855	0.60	+0.3
2,430,358	-		CA265_RS09855	0.60	-0.5
2,430,383	-		CA265_RS09855	0.61	+0.6
2,430,435	+		CA265_RS09855	0.65	-0.7
2,430,473	-		CA265_RS09855	0.67	-0.3
2,430,500	+		CA265_RS09855	0.69	-1.5
2,430,536	+		CA265_RS09855	0.71	-1.8
2,430,669	-		CA265_RS09855	0.79	+0.9
2,430,697	+		CA265_RS09855	0.81	-1.1
2,430,780	-		CA265_RS09855	0.86	-1.4
2,430,790	+		CA265_RS09855	0.87	-0.7
2,430,790	+		CA265_RS09855	0.87	-1.1
2,430,790	+				+1.3
2,430,859	-				-1.2
2,430,864	-				-0.4
2,430,868	+				-0.8
2,430,868	+				-2.6
2,430,874	-				+0.6
2,430,927	+				-0.8
2,430,931	-				-0.2
2,430,952	+				-1.1
2,430,963	-				-0.5
2,431,004	-				+0.2
2,431,008	+				-0.8
2,431,069	-				-1.7
2,431,077	+				-0.6
2,431,085	+				+0.8
2,431,147	+				+0.8
2,431,240	+				-0.4
2,431,315	+		CA265_RS09860	0.11	+0.4
2,431,316	-		CA265_RS09860	0.11	+0.4
2,431,317	+		CA265_RS09860	0.11	+0.6
2,431,317	+		CA265_RS09860	0.11	+0.1
2,431,427	-		CA265_RS09860	0.16	-0.1
2,431,464	-		CA265_RS09860	0.18	-0.3
2,431,518	+		CA265_RS09860	0.20	-0.2
2,431,565	+		CA265_RS09860	0.22	-0.4
2,431,627	+		CA265_RS09860	0.25	+0.2
2,431,627	+		CA265_RS09860	0.25	-0.3
2,431,697	+		CA265_RS09860	0.29	-0.2
2,431,706	+		CA265_RS09860	0.29	+0.3
2,431,707	-		CA265_RS09860	0.29	-0.6
2,431,808	+		CA265_RS09860	0.34	-1.6
2,431,921	+		CA265_RS09860	0.39	-0.3
2,431,922	-		CA265_RS09860	0.39	-0.7