Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05590

Experiment: R2A with A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.04 mg/ml
1,355,040	+		CA265_RS05580	0.15	-0.3
1,355,041	-		CA265_RS05580	0.16	-0.1
1,355,041	-		CA265_RS05580	0.16	+0.7
1,355,042	+		CA265_RS05580	0.16	-0.7
1,355,105	-		CA265_RS05580	0.29	-0.6
1,355,179	-		CA265_RS05580	0.45	-0.5
1,355,179	-		CA265_RS05580	0.45	-1.5
1,355,195	+		CA265_RS05580	0.49	-0.6
1,355,273	+		CA265_RS05580	0.65	+0.3
1,355,274	-		CA265_RS05580	0.65	+0.7
1,355,295	-		CA265_RS05580	0.70	+0.3
1,355,345	+		CA265_RS05580	0.81	+1.0
1,355,370	-		CA265_RS05580	0.86	+0.9
1,355,399	+				+0.5
1,355,515	+				+0.5
1,355,542	-				-0.7
1,355,564	+		CA265_RS05585	0.11	-0.5
1,355,594	-		CA265_RS05585	0.18	+0.2
1,355,638	+		CA265_RS05585	0.27	-0.5
1,355,639	-				+1.1
1,355,724	+		CA265_RS05585	0.46	+0.4
1,355,758	-		CA265_RS05585	0.54	-0.5
1,355,888	-		CA265_RS05585	0.82	-0.1
1,355,923	-		CA265_RS05585	0.90	-0.0
1,355,926	+				+1.0
1,355,926	+				-0.3
1,355,927	-				+0.5
1,355,927	-				-0.3
1,355,927	-				-0.2
1,355,932	+				-0.5
1,355,938	-				-0.7
1,355,993	+				-0.3
1,356,035	-				-0.6
1,356,045	-				-0.3
1,356,046	+				-0.1
1,356,047	-				-1.3
1,356,088	+				-0.6
1,356,089	-				-0.4
1,356,124	-				+0.4
1,356,124	-				-0.7
1,356,124	-				-0.2
1,356,147	+		CA265_RS05590	0.12	+0.4
1,356,148	-		CA265_RS05590	0.12	-1.7
1,356,148	-		CA265_RS05590	0.12	+0.1
1,356,214	+		CA265_RS05590	0.18	-0.2
1,356,247	+		CA265_RS05590	0.21	-0.9
1,356,291	+		CA265_RS05590	0.26	-1.9
1,356,469	-		CA265_RS05590	0.42	+1.1
1,356,480	-		CA265_RS05590	0.44	-0.8
1,356,559	+		CA265_RS05590	0.51	-1.3
1,356,589	+		CA265_RS05590	0.54	+0.4
1,356,627	-		CA265_RS05590	0.58	-0.5
1,356,627	-		CA265_RS05590	0.58	+0.4
1,356,634	+		CA265_RS05590	0.58	+0.3
1,356,668	-		CA265_RS05590	0.61	-0.4
1,356,727	+		CA265_RS05590	0.67	-0.5
1,356,791	+		CA265_RS05590	0.73	+0.0
1,356,791	+		CA265_RS05590	0.73	+0.1
1,356,801	+		CA265_RS05590	0.74	+0.1
1,356,805	+		CA265_RS05590	0.74	+0.7
1,356,830	+		CA265_RS05590	0.77	-0.1
1,356,831	-		CA265_RS05590	0.77	-0.3
1,356,837	-		CA265_RS05590	0.78	-0.5
1,356,837	-		CA265_RS05590	0.78	-0.9
1,356,873	+		CA265_RS05590	0.81	-1.5
1,356,940	+		CA265_RS05590	0.87	-0.6
1,356,941	-		CA265_RS05590	0.87	-0.1
1,356,980	+				-0.9
1,357,019	+				+0.3
1,357,057	+				-0.5
1,357,135	+				+0.7
1,357,178	-				-0.8
1,357,189	+				-0.1
1,357,191	+				-0.4
1,357,191	+				-0.4
1,357,191	+				+0.0
1,357,192	-				+0.3
1,357,192	-				+0.3
1,357,220	+				+0.2
1,357,233	+				+0.1
1,357,258	+				-0.1
1,357,290	+				+0.1
1,357,351	+				+0.0
1,357,356	+				+0.4
1,357,402	-				-1.0
1,357,448	-				-0.5
1,357,452	+				-0.5
1,357,472	+				-0.3
1,357,477	-				-0.0
1,357,492	-				-0.8
1,357,541	-		CA265_RS05595	0.16	+0.3
1,357,541	-		CA265_RS05595	0.16	-0.3
1,357,622	+		CA265_RS05595	0.29	+0.7
1,357,691	+		CA265_RS05595	0.41	+0.1
1,357,692	-		CA265_RS05595	0.41	+0.9
1,357,820	+		CA265_RS05595	0.63	+0.2
1,357,820	+		CA265_RS05595	0.63	-0.6
1,357,879	-		CA265_RS05595	0.73	+0.3
1,357,942	-		CA265_RS05595	0.83	-0.7
1,358,005	-				+0.7
1,358,018	+				-0.3