Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04030

Experiment: R2A with A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04025 and CA265_RS04030 are separated by 87 nucleotidesCA265_RS04030 and CA265_RS04035 are separated by 30 nucleotides CA265_RS04025: CA265_RS04025 - glycoside hydrolase family 2, at 963,509 to 966,673 _RS04025 CA265_RS04030: CA265_RS04030 - alpha-galactosidase, at 966,761 to 967,960 _RS04030 CA265_RS04035: CA265_RS04035 - hypothetical protein, at 967,991 to 969,499 _RS04035 Position (kb) 966 967 968Strain fitness (log2 ratio) -2 -1 0 1at 965.777 kb on + strand, within CA265_RS04025at 965.849 kb on - strand, within CA265_RS04025at 965.888 kb on + strand, within CA265_RS04025at 965.889 kb on - strand, within CA265_RS04025at 965.889 kb on - strand, within CA265_RS04025at 965.988 kb on + strand, within CA265_RS04025at 965.989 kb on - strand, within CA265_RS04025at 966.007 kb on - strand, within CA265_RS04025at 966.016 kb on + strand, within CA265_RS04025at 966.022 kb on + strand, within CA265_RS04025at 966.022 kb on + strand, within CA265_RS04025at 966.023 kb on - strand, within CA265_RS04025at 966.028 kb on + strand, within CA265_RS04025at 966.035 kb on - strand, within CA265_RS04025at 966.044 kb on - strand, within CA265_RS04025at 966.073 kb on - strand, within CA265_RS04025at 966.090 kb on + strand, within CA265_RS04025at 966.091 kb on - strand, within CA265_RS04025at 966.153 kb on + strand, within CA265_RS04025at 966.166 kb on + strand, within CA265_RS04025at 966.167 kb on - strand, within CA265_RS04025at 966.250 kb on + strand, within CA265_RS04025at 966.252 kb on - strand, within CA265_RS04025at 966.300 kb on + strand, within CA265_RS04025at 966.308 kb on - strand, within CA265_RS04025at 966.308 kb on - strand, within CA265_RS04025at 966.314 kb on - strand, within CA265_RS04025at 966.370 kb on + strandat 966.404 kb on - strandat 966.483 kb on + strandat 966.529 kb on - strandat 966.570 kb on + strandat 966.571 kb on - strandat 966.602 kb on - strandat 966.650 kb on + strandat 966.651 kb on - strandat 966.654 kb on - strandat 966.656 kb on - strandat 966.671 kb on + strandat 966.672 kb on - strandat 966.704 kb on + strandat 966.705 kb on - strandat 966.737 kb on + strandat 966.737 kb on + strandat 966.737 kb on + strandat 966.756 kb on + strandat 966.756 kb on + strandat 966.757 kb on - strandat 966.789 kb on + strandat 966.895 kb on + strand, within CA265_RS04030at 967.039 kb on - strand, within CA265_RS04030at 967.088 kb on + strand, within CA265_RS04030at 967.089 kb on - strand, within CA265_RS04030at 967.123 kb on + strand, within CA265_RS04030at 967.184 kb on + strand, within CA265_RS04030at 967.282 kb on + strand, within CA265_RS04030at 967.282 kb on + strand, within CA265_RS04030at 967.282 kb on + strand, within CA265_RS04030at 967.282 kb on + strand, within CA265_RS04030at 967.294 kb on + strand, within CA265_RS04030at 967.295 kb on - strand, within CA265_RS04030at 967.352 kb on - strand, within CA265_RS04030at 967.367 kb on + strand, within CA265_RS04030at 967.368 kb on - strand, within CA265_RS04030at 967.381 kb on + strand, within CA265_RS04030at 967.381 kb on - strand, within CA265_RS04030at 967.417 kb on + strand, within CA265_RS04030at 967.417 kb on + strand, within CA265_RS04030at 967.418 kb on - strand, within CA265_RS04030at 967.418 kb on - strand, within CA265_RS04030at 967.418 kb on - strand, within CA265_RS04030at 967.421 kb on + strand, within CA265_RS04030at 967.506 kb on + strand, within CA265_RS04030at 967.506 kb on + strand, within CA265_RS04030at 967.506 kb on + strand, within CA265_RS04030at 967.538 kb on - strand, within CA265_RS04030at 967.587 kb on - strand, within CA265_RS04030at 967.597 kb on + strand, within CA265_RS04030at 967.598 kb on - strand, within CA265_RS04030at 967.609 kb on - strand, within CA265_RS04030at 967.675 kb on - strand, within CA265_RS04030at 967.853 kb on + strandat 967.853 kb on + strandat 967.885 kb on - strandat 967.917 kb on + strandat 967.959 kb on - strandat 967.970 kb on + strandat 968.002 kb on - strandat 968.080 kb on + strandat 968.170 kb on + strand, within CA265_RS04035at 968.171 kb on - strand, within CA265_RS04035at 968.291 kb on - strand, within CA265_RS04035at 968.336 kb on + strand, within CA265_RS04035at 968.336 kb on + strand, within CA265_RS04035at 968.337 kb on - strand, within CA265_RS04035at 968.337 kb on - strand, within CA265_RS04035at 968.370 kb on - strand, within CA265_RS04035at 968.403 kb on + strand, within CA265_RS04035at 968.403 kb on + strand, within CA265_RS04035at 968.404 kb on - strand, within CA265_RS04035at 968.412 kb on + strand, within CA265_RS04035at 968.434 kb on + strand, within CA265_RS04035at 968.434 kb on + strand, within CA265_RS04035at 968.435 kb on - strand, within CA265_RS04035at 968.451 kb on - strand, within CA265_RS04035at 968.457 kb on + strand, within CA265_RS04035at 968.515 kb on - strand, within CA265_RS04035at 968.559 kb on - strand, within CA265_RS04035at 968.561 kb on - strand, within CA265_RS04035at 968.561 kb on - strand, within CA265_RS04035at 968.608 kb on + strand, within CA265_RS04035at 968.677 kb on - strand, within CA265_RS04035at 968.784 kb on + strand, within CA265_RS04035at 968.872 kb on + strand, within CA265_RS04035at 968.872 kb on + strand, within CA265_RS04035at 968.885 kb on + strand, within CA265_RS04035at 968.886 kb on - strand, within CA265_RS04035at 968.886 kb on - strand, within CA265_RS04035

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.04 mg/ml
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965,777 + CA265_RS04025 0.72 -1.7
965,849 - CA265_RS04025 0.74 +1.0
965,888 + CA265_RS04025 0.75 -0.5
965,889 - CA265_RS04025 0.75 +0.3
965,889 - CA265_RS04025 0.75 +0.5
965,988 + CA265_RS04025 0.78 -0.4
965,989 - CA265_RS04025 0.78 -0.8
966,007 - CA265_RS04025 0.79 -0.5
966,016 + CA265_RS04025 0.79 +0.2
966,022 + CA265_RS04025 0.79 -0.9
966,022 + CA265_RS04025 0.79 -0.1
966,023 - CA265_RS04025 0.79 +0.8
966,028 + CA265_RS04025 0.80 +0.1
966,035 - CA265_RS04025 0.80 -0.3
966,044 - CA265_RS04025 0.80 +0.3
966,073 - CA265_RS04025 0.81 -0.1
966,090 + CA265_RS04025 0.82 -0.2
966,091 - CA265_RS04025 0.82 +1.4
966,153 + CA265_RS04025 0.84 +0.4
966,166 + CA265_RS04025 0.84 -0.2
966,167 - CA265_RS04025 0.84 +0.1
966,250 + CA265_RS04025 0.87 -0.1
966,252 - CA265_RS04025 0.87 +0.3
966,300 + CA265_RS04025 0.88 +0.0
966,308 - CA265_RS04025 0.88 +1.5
966,308 - CA265_RS04025 0.88 -0.0
966,314 - CA265_RS04025 0.89 +0.5
966,370 + +0.9
966,404 - +0.5
966,483 + -0.6
966,529 - +1.4
966,570 + +0.2
966,571 - +0.6
966,602 - +0.6
966,650 + -0.1
966,651 - -1.1
966,654 - -1.2
966,656 - -0.4
966,671 + +0.5
966,672 - +0.2
966,704 + -0.4
966,705 - -0.4
966,737 + -0.6
966,737 + -1.3
966,737 + -0.5
966,756 + +0.2
966,756 + -0.6
966,757 - -0.2
966,789 + -0.1
966,895 + CA265_RS04030 0.11 -0.3
967,039 - CA265_RS04030 0.23 -1.8
967,088 + CA265_RS04030 0.27 +0.9
967,089 - CA265_RS04030 0.27 +0.2
967,123 + CA265_RS04030 0.30 +0.6
967,184 + CA265_RS04030 0.35 -0.6
967,282 + CA265_RS04030 0.43 -1.0
967,282 + CA265_RS04030 0.43 -0.8
967,282 + CA265_RS04030 0.43 -0.6
967,282 + CA265_RS04030 0.43 -0.7
967,294 + CA265_RS04030 0.44 +0.5
967,295 - CA265_RS04030 0.45 +0.0
967,352 - CA265_RS04030 0.49 -1.1
967,367 + CA265_RS04030 0.51 -0.5
967,368 - CA265_RS04030 0.51 +1.0
967,381 + CA265_RS04030 0.52 -0.8
967,381 - CA265_RS04030 0.52 +0.2
967,417 + CA265_RS04030 0.55 +0.2
967,417 + CA265_RS04030 0.55 -0.6
967,418 - CA265_RS04030 0.55 -0.1
967,418 - CA265_RS04030 0.55 +0.7
967,418 - CA265_RS04030 0.55 -0.3
967,421 + CA265_RS04030 0.55 -0.3
967,506 + CA265_RS04030 0.62 -0.1
967,506 + CA265_RS04030 0.62 -0.1
967,506 + CA265_RS04030 0.62 -0.7
967,538 - CA265_RS04030 0.65 +0.1
967,587 - CA265_RS04030 0.69 -0.3
967,597 + CA265_RS04030 0.70 -0.2
967,598 - CA265_RS04030 0.70 +0.0
967,609 - CA265_RS04030 0.71 -0.1
967,675 - CA265_RS04030 0.76 -0.8
967,853 + -0.5
967,853 + -1.0
967,885 - -0.3
967,917 + -0.3
967,959 - +1.0
967,970 + +0.5
968,002 - +0.1
968,080 + -0.4
968,170 + CA265_RS04035 0.12 -0.9
968,171 - CA265_RS04035 0.12 +0.0
968,291 - CA265_RS04035 0.20 -0.3
968,336 + CA265_RS04035 0.23 -0.1
968,336 + CA265_RS04035 0.23 -0.9
968,337 - CA265_RS04035 0.23 -2.0
968,337 - CA265_RS04035 0.23 +0.4
968,370 - CA265_RS04035 0.25 -0.8
968,403 + CA265_RS04035 0.27 -1.9
968,403 + CA265_RS04035 0.27 -0.9
968,404 - CA265_RS04035 0.27 -0.1
968,412 + CA265_RS04035 0.28 -0.2
968,434 + CA265_RS04035 0.29 -0.1
968,434 + CA265_RS04035 0.29 -0.8
968,435 - CA265_RS04035 0.29 -0.1
968,451 - CA265_RS04035 0.30 -1.3
968,457 + CA265_RS04035 0.31 -1.6
968,515 - CA265_RS04035 0.35 -0.6
968,559 - CA265_RS04035 0.38 +0.2
968,561 - CA265_RS04035 0.38 +0.0
968,561 - CA265_RS04035 0.38 -0.2
968,608 + CA265_RS04035 0.41 -1.0
968,677 - CA265_RS04035 0.45 -0.9
968,784 + CA265_RS04035 0.53 -0.4
968,872 + CA265_RS04035 0.58 -1.1
968,872 + CA265_RS04035 0.58 -1.6
968,885 + CA265_RS04035 0.59 -0.2
968,886 - CA265_RS04035 0.59 -0.1
968,886 - CA265_RS04035 0.59 +0.7

Or see this region's nucleotide sequence