Experiment: CDM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13815 and BBR_RS13820 are separated by 255 nucleotides BBR_RS13820 and BBR_RS13825 are separated by 478 nucleotides
BBR_RS13815: BBR_RS13815 - NAD-dependent DNA ligase LigA, at 874,963 to 877,755
_RS13815
BBR_RS13820: BBR_RS13820 - ATP-binding protein, at 878,011 to 879,132
_RS13820
BBR_RS13825: BBR_RS13825 - type I glutamate--ammonia ligase, at 879,611 to 881,047
_RS13825
Position (kb) 878
879
880 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 877.771 kb on - strand at 877.776 kb on + strand at 877.849 kb on + strand at 877.888 kb on - strand at 877.914 kb on + strand at 877.919 kb on + strand at 877.927 kb on - strand at 877.929 kb on + strand at 877.942 kb on - strand at 877.972 kb on + strand at 877.980 kb on - strand at 877.980 kb on - strand at 877.980 kb on - strand at 877.999 kb on + strand at 878.260 kb on + strand, within BBR_RS13820 at 879.112 kb on - strand at 879.126 kb on + strand at 879.131 kb on + strand at 879.134 kb on - strand at 879.163 kb on + strand at 879.170 kb on + strand at 879.171 kb on + strand at 879.389 kb on - strand at 879.447 kb on - strand at 879.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 remove 877,771 - -2.0 877,776 + +2.2 877,849 + +2.1 877,888 - +0.2 877,914 + +1.4 877,919 + -1.9 877,927 - +2.5 877,929 + -0.7 877,942 - -0.6 877,972 + +1.8 877,980 - -0.0 877,980 - -1.8 877,980 - +0.2 877,999 + +0.3 878,260 + BBR_RS13820 0.22 -4.9 879,112 - -1.3 879,126 + +2.1 879,131 + +0.2 879,134 - +0.5 879,163 + +0.3 879,170 + +0.6 879,171 + -0.4 879,389 - -1.1 879,447 - -2.2 879,490 + +1.7
Or see this region's nucleotide sequence