Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24375

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS24365 and AZOBR_RS24370 overlap by 4 nucleotidesAZOBR_RS24370 and AZOBR_RS24375 overlap by 55 nucleotidesAZOBR_RS24375 and AZOBR_RS24380 overlap by 4 nucleotidesAZOBR_RS24380 and AZOBR_RS24385 are separated by 56 nucleotides AZOBR_RS24365: AZOBR_RS24365 - hypothetical protein, at 516,727 to 517,728 _RS24365 AZOBR_RS24370: AZOBR_RS24370 - hypothetical protein, at 517,725 to 518,237 _RS24370 AZOBR_RS24375: AZOBR_RS24375 - membrane protein, at 518,183 to 519,262 _RS24375 AZOBR_RS24380: AZOBR_RS24380 - hypothetical protein, at 519,259 to 520,200 _RS24380 AZOBR_RS24385: AZOBR_RS24385 - TPR repeat-containing protein, at 520,257 to 520,835 _RS24385 Position (kb) 518 519 520Strain fitness (log2 ratio) -1 0 1at 517.482 kb on + strand, within AZOBR_RS24365at 517.483 kb on - strand, within AZOBR_RS24365at 518.230 kb on + strandat 519.056 kb on + strand, within AZOBR_RS24375at 519.057 kb on - strand, within AZOBR_RS24375at 519.057 kb on - strand, within AZOBR_RS24375at 519.057 kb on - strand, within AZOBR_RS24375at 519.451 kb on - strand, within AZOBR_RS24380

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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517,482 + AZOBR_RS24365 0.75 -0.3
517,483 - AZOBR_RS24365 0.75 -0.1
518,230 + +0.7
519,056 + AZOBR_RS24375 0.81 +0.8
519,057 - AZOBR_RS24375 0.81 -0.4
519,057 - AZOBR_RS24375 0.81 -0.2
519,057 - AZOBR_RS24375 0.81 +0.7
519,451 - AZOBR_RS24380 0.20 -0.5

Or see this region's nucleotide sequence