Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17025 and AZOBR_RS17030 are separated by 189 nucleotides AZOBR_RS17030 and AZOBR_RS17035 overlap by 89 nucleotides AZOBR_RS17035 and AZOBR_RS17040 are separated by 118 nucleotides
AZOBR_RS17025: AZOBR_RS17025 - squalene--hopene cyclase, at 573,093 to 575,024
_RS17025
AZOBR_RS17030: AZOBR_RS17030 - hypothetical protein, at 575,214 to 577,871
_RS17030
AZOBR_RS17035: AZOBR_RS17035 - hypothetical protein, at 577,783 to 578,742
_RS17035
AZOBR_RS17040: AZOBR_RS17040 - putative sulfotransferase, at 578,861 to 579,955
_RS17040
Position (kb) 575
576
577
578 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 574.855 kb on + strand at 575.065 kb on + strand at 575.065 kb on + strand at 575.066 kb on - strand at 575.066 kb on - strand at 575.108 kb on + strand at 575.108 kb on + strand at 575.113 kb on + strand at 575.113 kb on + strand at 575.113 kb on + strand at 575.113 kb on + strand at 575.114 kb on - strand at 575.114 kb on - strand at 575.123 kb on + strand at 575.124 kb on - strand at 575.178 kb on + strand at 575.179 kb on - strand at 575.179 kb on - strand at 575.323 kb on - strand at 575.364 kb on - strand at 575.406 kb on + strand at 575.407 kb on - strand at 575.491 kb on + strand, within AZOBR_RS17030 at 575.562 kb on + strand, within AZOBR_RS17030 at 575.563 kb on - strand, within AZOBR_RS17030 at 575.563 kb on - strand, within AZOBR_RS17030 at 575.715 kb on - strand, within AZOBR_RS17030 at 576.696 kb on + strand, within AZOBR_RS17030 at 576.696 kb on + strand, within AZOBR_RS17030 at 576.697 kb on - strand, within AZOBR_RS17030 at 577.776 kb on + strand at 577.776 kb on + strand at 577.776 kb on + strand at 577.777 kb on - strand at 578.621 kb on + strand, within AZOBR_RS17035 at 578.622 kb on - strand, within AZOBR_RS17035 at 578.622 kb on - strand, within AZOBR_RS17035 at 578.622 kb on - strand, within AZOBR_RS17035 at 578.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 574,855 + +0.1 575,065 + -1.0 575,065 + -0.9 575,066 - +0.1 575,066 - -0.1 575,108 + +0.1 575,108 + -0.3 575,113 + -1.0 575,113 + +2.9 575,113 + +0.2 575,113 + -0.7 575,114 - +0.1 575,114 - -0.8 575,123 + -0.7 575,124 - +0.2 575,178 + +0.3 575,179 - +0.3 575,179 - -0.1 575,323 - +0.2 575,364 - +0.8 575,406 + -0.7 575,407 - +0.3 575,491 + AZOBR_RS17030 0.10 -0.1 575,562 + AZOBR_RS17030 0.13 -0.7 575,563 - AZOBR_RS17030 0.13 +0.0 575,563 - AZOBR_RS17030 0.13 +0.9 575,715 - AZOBR_RS17030 0.19 -0.7 576,696 + AZOBR_RS17030 0.56 +1.2 576,696 + AZOBR_RS17030 0.56 -0.1 576,697 - AZOBR_RS17030 0.56 +0.4 577,776 + -0.7 577,776 + +0.7 577,776 + -0.5 577,777 - +0.2 578,621 + AZOBR_RS17035 0.87 -0.1 578,622 - AZOBR_RS17035 0.87 +0.8 578,622 - AZOBR_RS17035 0.87 +0.6 578,622 - AZOBR_RS17035 0.87 -1.8 578,655 - -0.1
Or see this region's nucleotide sequence