Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13510

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13505 and AZOBR_RS13510 are separated by 84 nucleotidesAZOBR_RS13510 and AZOBR_RS13515 are separated by 130 nucleotides AZOBR_RS13505: AZOBR_RS13505 - translation initiation factor IF-3, at 2,866,194 to 2,866,721 _RS13505 AZOBR_RS13510: AZOBR_RS13510 - threonyl-tRNA synthetase, at 2,866,806 to 2,868,770 _RS13510 AZOBR_RS13515: AZOBR_RS13515 - diguanylate phosphodiesterase, at 2,868,901 to 2,870,136 _RS13515 Position (kb) 2866 2867 2868 2869Strain fitness (log2 ratio) -1 0 1at 2865.850 kb on + strandat 2865.850 kb on + strandat 2865.850 kb on + strandat 2865.850 kb on + strandat 2865.851 kb on - strandat 2865.851 kb on - strandat 2865.851 kb on - strandat 2865.851 kb on - strandat 2866.067 kb on + strandat 2866.406 kb on - strand, within AZOBR_RS13505at 2866.501 kb on + strand, within AZOBR_RS13505at 2866.502 kb on - strand, within AZOBR_RS13505at 2866.517 kb on - strand, within AZOBR_RS13505at 2866.517 kb on - strand, within AZOBR_RS13505at 2866.729 kb on - strandat 2866.807 kb on + strandat 2866.807 kb on + strandat 2868.898 kb on + strandat 2868.899 kb on - strandat 2868.899 kb on - strandat 2868.902 kb on + strandat 2868.902 kb on + strandat 2868.903 kb on - strandat 2868.903 kb on - strandat 2868.903 kb on - strandat 2868.962 kb on + strandat 2868.962 kb on + strandat 2868.963 kb on - strandat 2869.131 kb on - strand, within AZOBR_RS13515at 2869.494 kb on - strand, within AZOBR_RS13515

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,865,850 + -0.1
2,865,850 + -0.1
2,865,850 + +0.5
2,865,850 + -0.4
2,865,851 - +0.2
2,865,851 - +0.1
2,865,851 - +0.2
2,865,851 - -1.0
2,866,067 + -0.0
2,866,406 - AZOBR_RS13505 0.40 -0.1
2,866,501 + AZOBR_RS13505 0.58 -0.3
2,866,502 - AZOBR_RS13505 0.58 +1.5
2,866,517 - AZOBR_RS13505 0.61 -0.4
2,866,517 - AZOBR_RS13505 0.61 -0.0
2,866,729 - +0.6
2,866,807 + +0.5
2,866,807 + +0.6
2,868,898 + +0.6
2,868,899 - +1.4
2,868,899 - -0.1
2,868,902 + -0.2
2,868,902 + +0.0
2,868,903 - -0.2
2,868,903 - +1.6
2,868,903 - -0.4
2,868,962 + -0.1
2,868,962 + +0.0
2,868,963 - +0.1
2,869,131 - AZOBR_RS13515 0.19 -0.8
2,869,494 - AZOBR_RS13515 0.48 +0.4

Or see this region's nucleotide sequence