Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01700 and AZOBR_RS01705 are separated by 120 nucleotides AZOBR_RS01705 and AZOBR_RS01710 are separated by 13 nucleotides AZOBR_RS01710 and AZOBR_RS01715 are separated by 242 nucleotides
AZOBR_RS01700: AZOBR_RS01700 - hypothetical protein, at 346,687 to 347,484
_RS01700
AZOBR_RS01705: AZOBR_RS01705 - murein transglycosylase, at 347,605 to 348,810
_RS01705
AZOBR_RS01710: AZOBR_RS01710 - translocase, at 348,824 to 349,498
_RS01710
AZOBR_RS01715: AZOBR_RS01715 - exlusion protein FxsA, at 349,741 to 350,241
_RS01715
Position (kb) 347
348
349 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 346.695 kb on - strand at 346.695 kb on - strand at 346.770 kb on - strand, within AZOBR_RS01700 at 346.970 kb on + strand, within AZOBR_RS01700 at 346.970 kb on + strand, within AZOBR_RS01700 at 346.971 kb on - strand, within AZOBR_RS01700 at 346.971 kb on - strand, within AZOBR_RS01700 at 347.399 kb on + strand, within AZOBR_RS01700 at 347.399 kb on + strand, within AZOBR_RS01700 at 347.400 kb on - strand, within AZOBR_RS01700 at 347.400 kb on - strand, within AZOBR_RS01700 at 347.642 kb on + strand at 347.642 kb on + strand at 347.643 kb on - strand at 347.643 kb on - strand at 347.643 kb on - strand at 347.643 kb on - strand at 347.643 kb on - strand at 347.643 kb on - strand at 347.643 kb on - strand at 347.645 kb on + strand at 347.645 kb on + strand at 347.646 kb on - strand at 347.646 kb on - strand at 347.646 kb on - strand at 347.927 kb on + strand, within AZOBR_RS01705 at 347.928 kb on - strand, within AZOBR_RS01705 at 347.928 kb on - strand, within AZOBR_RS01705 at 347.928 kb on - strand, within AZOBR_RS01705 at 347.928 kb on - strand, within AZOBR_RS01705 at 347.928 kb on - strand at 347.928 kb on - strand, within AZOBR_RS01705 at 348.059 kb on + strand, within AZOBR_RS01705 at 348.059 kb on + strand, within AZOBR_RS01705 at 348.059 kb on + strand, within AZOBR_RS01705 at 348.059 kb on + strand, within AZOBR_RS01705 at 348.059 kb on + strand, within AZOBR_RS01705 at 348.060 kb on - strand, within AZOBR_RS01705 at 348.060 kb on - strand, within AZOBR_RS01705 at 348.060 kb on - strand, within AZOBR_RS01705 at 348.060 kb on - strand, within AZOBR_RS01705 at 348.339 kb on - strand, within AZOBR_RS01705 at 348.339 kb on - strand, within AZOBR_RS01705 at 348.339 kb on - strand, within AZOBR_RS01705 at 348.339 kb on - strand, within AZOBR_RS01705 at 348.444 kb on - strand, within AZOBR_RS01705 at 349.219 kb on - strand, within AZOBR_RS01710 at 349.559 kb on + strand at 349.559 kb on + strand at 349.585 kb on + strand at 349.585 kb on + strand at 349.585 kb on + strand at 349.586 kb on - strand at 349.586 kb on - strand at 349.586 kb on - strand at 349.586 kb on - strand at 349.704 kb on + strand at 349.705 kb on - strand at 349.705 kb on - strand at 349.705 kb on - strand at 349.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 346,695 - +0.1 346,695 - -0.6 346,770 - AZOBR_RS01700 0.10 +0.2 346,970 + AZOBR_RS01700 0.35 -0.3 346,970 + AZOBR_RS01700 0.35 -0.4 346,971 - AZOBR_RS01700 0.36 +0.2 346,971 - AZOBR_RS01700 0.36 +0.2 347,399 + AZOBR_RS01700 0.89 -0.3 347,399 + AZOBR_RS01700 0.89 -0.1 347,400 - AZOBR_RS01700 0.89 -1.4 347,400 - AZOBR_RS01700 0.89 -0.8 347,642 + -0.3 347,642 + +0.1 347,643 - -0.6 347,643 - +1.6 347,643 - -0.1 347,643 - -0.6 347,643 - -0.7 347,643 - -1.4 347,643 - +1.1 347,645 + -0.4 347,645 + -0.6 347,646 - -0.5 347,646 - +1.2 347,646 - -0.2 347,927 + AZOBR_RS01705 0.27 +1.8 347,928 - AZOBR_RS01705 0.27 +2.2 347,928 - AZOBR_RS01705 0.27 +0.1 347,928 - AZOBR_RS01705 0.27 -0.9 347,928 - AZOBR_RS01705 0.27 -1.8 347,928 - +0.2 347,928 - AZOBR_RS01705 0.27 +0.6 348,059 + AZOBR_RS01705 0.38 +0.5 348,059 + AZOBR_RS01705 0.38 -0.2 348,059 + AZOBR_RS01705 0.38 -0.3 348,059 + AZOBR_RS01705 0.38 -0.7 348,059 + AZOBR_RS01705 0.38 -0.8 348,060 - AZOBR_RS01705 0.38 -0.1 348,060 - AZOBR_RS01705 0.38 +0.4 348,060 - AZOBR_RS01705 0.38 -0.4 348,060 - AZOBR_RS01705 0.38 +0.4 348,339 - AZOBR_RS01705 0.61 -0.4 348,339 - AZOBR_RS01705 0.61 +0.2 348,339 - AZOBR_RS01705 0.61 -1.7 348,339 - AZOBR_RS01705 0.61 -0.1 348,444 - AZOBR_RS01705 0.70 +0.5 349,219 - AZOBR_RS01710 0.59 -0.1 349,559 + +0.9 349,559 + +0.5 349,585 + +0.3 349,585 + -0.2 349,585 + -1.1 349,586 - -0.5 349,586 - -0.5 349,586 - +0.9 349,586 - -0.7 349,704 + +2.8 349,705 - +0.5 349,705 - -0.4 349,705 - +0.4 349,708 + +1.2
Or see this region's nucleotide sequence