Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01530 and AZOBR_RS01535 are separated by 21 nucleotides AZOBR_RS01535 and AZOBR_RS01540 are separated by 96 nucleotides AZOBR_RS01540 and AZOBR_RS01545 overlap by 4 nucleotides
AZOBR_RS01530: AZOBR_RS01530 - conserved membrane protein of unknown function, at 315,157 to 316,623
_RS01530
AZOBR_RS01535: AZOBR_RS01535 - universal stress protein, at 316,645 to 317,097
_RS01535
AZOBR_RS01540: AZOBR_RS01540 - hypothetical protein, at 317,194 to 317,973
_RS01540
AZOBR_RS01545: AZOBR_RS01545 - permease, at 317,970 to 318,887
_RS01545
Position (kb) 316
317
318 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 315.670 kb on + strand, within AZOBR_RS01530 at 315.670 kb on + strand, within AZOBR_RS01530 at 315.671 kb on - strand, within AZOBR_RS01530 at 315.704 kb on - strand, within AZOBR_RS01530 at 315.962 kb on - strand, within AZOBR_RS01530 at 315.962 kb on - strand, within AZOBR_RS01530 at 315.964 kb on + strand, within AZOBR_RS01530 at 315.964 kb on + strand, within AZOBR_RS01530 at 315.965 kb on - strand, within AZOBR_RS01530 at 316.226 kb on - strand, within AZOBR_RS01530 at 316.396 kb on + strand, within AZOBR_RS01530 at 316.396 kb on + strand, within AZOBR_RS01530 at 316.397 kb on - strand, within AZOBR_RS01530 at 316.397 kb on - strand, within AZOBR_RS01530 at 316.423 kb on + strand, within AZOBR_RS01530 at 316.424 kb on - strand, within AZOBR_RS01530 at 316.452 kb on + strand, within AZOBR_RS01530 at 316.453 kb on - strand, within AZOBR_RS01530 at 316.453 kb on - strand, within AZOBR_RS01530 at 316.504 kb on + strand at 316.613 kb on - strand at 316.646 kb on + strand at 316.646 kb on + strand at 316.647 kb on - strand at 316.647 kb on - strand at 316.998 kb on - strand, within AZOBR_RS01535 at 316.998 kb on - strand, within AZOBR_RS01535 at 316.998 kb on - strand, within AZOBR_RS01535 at 317.264 kb on + strand at 317.264 kb on + strand at 317.265 kb on - strand at 317.390 kb on + strand, within AZOBR_RS01540 at 317.391 kb on - strand, within AZOBR_RS01540 at 317.391 kb on - strand, within AZOBR_RS01540 at 317.391 kb on - strand, within AZOBR_RS01540 at 317.391 kb on - strand, within AZOBR_RS01540 at 317.391 kb on - strand, within AZOBR_RS01540 at 317.420 kb on + strand, within AZOBR_RS01540 at 317.420 kb on + strand, within AZOBR_RS01540 at 317.420 kb on + strand, within AZOBR_RS01540 at 317.420 kb on + strand, within AZOBR_RS01540 at 317.420 kb on + strand, within AZOBR_RS01540 at 317.421 kb on - strand, within AZOBR_RS01540 at 317.421 kb on - strand, within AZOBR_RS01540 at 317.651 kb on + strand, within AZOBR_RS01540 at 317.651 kb on + strand, within AZOBR_RS01540 at 317.651 kb on + strand, within AZOBR_RS01540 at 317.652 kb on - strand, within AZOBR_RS01540 at 317.652 kb on - strand, within AZOBR_RS01540 at 317.652 kb on - strand, within AZOBR_RS01540 at 317.652 kb on - strand, within AZOBR_RS01540 at 317.652 kb on - strand, within AZOBR_RS01540 at 317.652 kb on - strand, within AZOBR_RS01540 at 317.652 kb on - strand, within AZOBR_RS01540 at 317.652 kb on - strand, within AZOBR_RS01540 at 317.652 kb on - strand at 317.652 kb on - strand, within AZOBR_RS01540 at 317.652 kb on - strand, within AZOBR_RS01540
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 315,670 + AZOBR_RS01530 0.35 +0.1 315,670 + AZOBR_RS01530 0.35 -0.6 315,671 - AZOBR_RS01530 0.35 -0.2 315,704 - AZOBR_RS01530 0.37 -1.8 315,962 - AZOBR_RS01530 0.55 +0.6 315,962 - AZOBR_RS01530 0.55 -0.6 315,964 + AZOBR_RS01530 0.55 -0.6 315,964 + AZOBR_RS01530 0.55 -0.3 315,965 - AZOBR_RS01530 0.55 -0.0 316,226 - AZOBR_RS01530 0.73 +0.2 316,396 + AZOBR_RS01530 0.84 -0.5 316,396 + AZOBR_RS01530 0.84 -0.4 316,397 - AZOBR_RS01530 0.85 -0.1 316,397 - AZOBR_RS01530 0.85 +1.0 316,423 + AZOBR_RS01530 0.86 -0.0 316,424 - AZOBR_RS01530 0.86 -0.1 316,452 + AZOBR_RS01530 0.88 -0.9 316,453 - AZOBR_RS01530 0.88 +0.1 316,453 - AZOBR_RS01530 0.88 -0.9 316,504 + +1.2 316,613 - -0.1 316,646 + -0.0 316,646 + +0.7 316,647 - +1.5 316,647 - +0.2 316,998 - AZOBR_RS01535 0.78 -1.8 316,998 - AZOBR_RS01535 0.78 -0.5 316,998 - AZOBR_RS01535 0.78 -0.5 317,264 + +0.4 317,264 + -0.3 317,265 - -1.6 317,390 + AZOBR_RS01540 0.25 +0.5 317,391 - AZOBR_RS01540 0.25 +0.3 317,391 - AZOBR_RS01540 0.25 -1.2 317,391 - AZOBR_RS01540 0.25 +0.4 317,391 - AZOBR_RS01540 0.25 -0.2 317,391 - AZOBR_RS01540 0.25 -0.1 317,420 + AZOBR_RS01540 0.29 -0.9 317,420 + AZOBR_RS01540 0.29 -0.5 317,420 + AZOBR_RS01540 0.29 -0.5 317,420 + AZOBR_RS01540 0.29 +0.1 317,420 + AZOBR_RS01540 0.29 +0.2 317,421 - AZOBR_RS01540 0.29 -0.7 317,421 - AZOBR_RS01540 0.29 -0.2 317,651 + AZOBR_RS01540 0.59 +0.2 317,651 + AZOBR_RS01540 0.59 -0.3 317,651 + AZOBR_RS01540 0.59 +0.5 317,652 - AZOBR_RS01540 0.59 +0.4 317,652 - AZOBR_RS01540 0.59 -0.7 317,652 - AZOBR_RS01540 0.59 -0.1 317,652 - AZOBR_RS01540 0.59 -0.1 317,652 - AZOBR_RS01540 0.59 -0.2 317,652 - AZOBR_RS01540 0.59 +1.8 317,652 - AZOBR_RS01540 0.59 +0.0 317,652 - AZOBR_RS01540 0.59 -0.6 317,652 - +2.8 317,652 - AZOBR_RS01540 0.59 +0.4 317,652 - AZOBR_RS01540 0.59 +0.6
Or see this region's nucleotide sequence