Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2617

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2616 and DvMF_2617 are separated by 21 nucleotidesDvMF_2617 and DvMF_2618 are separated by 299 nucleotides DvMF_2616: DvMF_2616 - nitrogenase molybdenum-iron protein alpha chain (RefSeq), at 3,304,289 to 3,305,923 _2616 DvMF_2617: DvMF_2617 - nitrogenase molybdenum-iron protein beta chain (RefSeq), at 3,305,945 to 3,307,321 _2617 DvMF_2618: DvMF_2618 - Dinitrogenase iron-molybdenum cofactor biosynthesis protein (RefSeq), at 3,307,621 to 3,308,880 _2618 Position (kb) 3305 3306 3307 3308Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3305.055 kb on + strand, within DvMF_2616at 3305.528 kb on - strand, within DvMF_2616at 3305.534 kb on - strand, within DvMF_2616at 3305.660 kb on - strand, within DvMF_2616at 3305.689 kb on + strand, within DvMF_2616at 3305.740 kb on + strand, within DvMF_2616at 3305.955 kb on + strandat 3306.110 kb on + strand, within DvMF_2617at 3306.199 kb on + strand, within DvMF_2617at 3306.266 kb on - strand, within DvMF_2617at 3306.296 kb on - strand, within DvMF_2617at 3306.432 kb on - strand, within DvMF_2617at 3306.634 kb on - strand, within DvMF_2617at 3306.634 kb on - strand, within DvMF_2617at 3306.668 kb on - strand, within DvMF_2617at 3306.729 kb on + strand, within DvMF_2617at 3306.739 kb on + strand, within DvMF_2617at 3306.858 kb on - strand, within DvMF_2617at 3307.114 kb on + strand, within DvMF_2617at 3307.228 kb on - strandat 3307.230 kb on - strandat 3307.574 kb on - strandat 3307.585 kb on - strandat 3307.828 kb on + strand, within DvMF_2618at 3307.836 kb on - strand, within DvMF_2618at 3307.836 kb on - strand, within DvMF_2618at 3308.016 kb on + strand, within DvMF_2618at 3308.031 kb on + strand, within DvMF_2618at 3308.153 kb on - strand, within DvMF_2618

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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3,305,055 + DvMF_2616 0.47 -4.2
3,305,528 - DvMF_2616 0.76 -1.0
3,305,534 - DvMF_2616 0.76 -0.7
3,305,660 - DvMF_2616 0.84 -0.0
3,305,689 + DvMF_2616 0.86 -0.2
3,305,740 + DvMF_2616 0.89 +0.9
3,305,955 + +0.1
3,306,110 + DvMF_2617 0.12 +0.3
3,306,199 + DvMF_2617 0.18 -0.6
3,306,266 - DvMF_2617 0.23 -0.4
3,306,296 - DvMF_2617 0.25 -0.9
3,306,432 - DvMF_2617 0.35 -1.1
3,306,634 - DvMF_2617 0.50 -0.4
3,306,634 - DvMF_2617 0.50 -0.6
3,306,668 - DvMF_2617 0.53 +0.3
3,306,729 + DvMF_2617 0.57 -0.9
3,306,739 + DvMF_2617 0.58 +1.0
3,306,858 - DvMF_2617 0.66 -0.6
3,307,114 + DvMF_2617 0.85 -1.1
3,307,228 - -0.9
3,307,230 - -0.8
3,307,574 - -0.7
3,307,585 - -0.8
3,307,828 + DvMF_2618 0.16 -0.6
3,307,836 - DvMF_2618 0.17 -1.4
3,307,836 - DvMF_2618 0.17 -0.1
3,308,016 + DvMF_2618 0.31 -0.6
3,308,031 + DvMF_2618 0.33 -0.7
3,308,153 - DvMF_2618 0.42 -0.7

Or see this region's nucleotide sequence