Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2538

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2537 and DvMF_2538 are separated by 342 nucleotidesDvMF_2538 and DvMF_2539 are separated by 296 nucleotides DvMF_2537: DvMF_2537 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 3,202,729 to 3,206,397 _2537 DvMF_2538: DvMF_2538 - hypothetical protein (RefSeq), at 3,206,740 to 3,207,027 _2538 DvMF_2539: DvMF_2539 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,207,324 to 3,209,369 _2539 Position (kb) 3206 3207 3208Strain fitness (log2 ratio) -2 -1 0 1at 3206.254 kb on - strandat 3206.361 kb on + strandat 3206.834 kb on + strand, within DvMF_2538at 3206.837 kb on - strand, within DvMF_2538at 3206.881 kb on - strand, within DvMF_2538at 3206.918 kb on + strand, within DvMF_2538at 3207.062 kb on - strandat 3207.082 kb on + strandat 3207.178 kb on - strandat 3207.192 kb on + strandat 3207.200 kb on - strandat 3207.363 kb on - strandat 3207.443 kb on + strandat 3207.451 kb on - strandat 3207.451 kb on - strandat 3207.458 kb on - strandat 3207.604 kb on + strand, within DvMF_2539at 3207.691 kb on - strand, within DvMF_2539at 3207.885 kb on - strand, within DvMF_2539at 3207.926 kb on + strand, within DvMF_2539at 3207.934 kb on - strand, within DvMF_2539

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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3,206,254 - -0.4
3,206,361 + -0.3
3,206,834 + DvMF_2538 0.33 -0.2
3,206,837 - DvMF_2538 0.34 -0.3
3,206,881 - DvMF_2538 0.49 -1.0
3,206,918 + DvMF_2538 0.62 -1.5
3,207,062 - -2.4
3,207,082 + -0.4
3,207,178 - -0.7
3,207,192 + -1.3
3,207,200 - -0.8
3,207,363 - -0.7
3,207,443 + -2.3
3,207,451 - -0.8
3,207,451 - -1.8
3,207,458 - -0.7
3,207,604 + DvMF_2539 0.14 -2.1
3,207,691 - DvMF_2539 0.18 -0.8
3,207,885 - DvMF_2539 0.27 +0.1
3,207,926 + DvMF_2539 0.29 -2.5
3,207,934 - DvMF_2539 0.30 +0.6

Or see this region's nucleotide sequence