Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2112

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2111 and DvMF_2112 are separated by 433 nucleotidesDvMF_2112 and DvMF_2113 are separated by 389 nucleotidesDvMF_2113 and DvMF_2114 are separated by 251 nucleotides DvMF_2111: DvMF_2111 - hypothetical protein (RefSeq), at 2,631,458 to 2,631,952 _2111 DvMF_2112: DvMF_2112 - ADP-ribosylation/Crystallin J1 (RefSeq), at 2,632,386 to 2,633,303 _2112 DvMF_2113: DvMF_2113 - hypothetical protein (RefSeq), at 2,633,693 to 2,633,878 _2113 DvMF_2114: DvMF_2114 - putative rRNA methylase (RefSeq), at 2,634,130 to 2,634,861 _2114 Position (kb) 2632 2633 2634Strain fitness (log2 ratio) -2 -1 0 1at 2631.460 kb on - strandat 2631.610 kb on - strand, within DvMF_2111at 2631.729 kb on + strand, within DvMF_2111at 2631.812 kb on - strand, within DvMF_2111at 2631.888 kb on - strand, within DvMF_2111at 2631.888 kb on - strand, within DvMF_2111at 2631.900 kb on + strand, within DvMF_2111at 2631.956 kb on - strandat 2632.380 kb on - strandat 2632.691 kb on - strand, within DvMF_2112at 2632.706 kb on + strand, within DvMF_2112at 2632.751 kb on + strand, within DvMF_2112at 2632.754 kb on - strand, within DvMF_2112at 2632.852 kb on + strand, within DvMF_2112at 2632.961 kb on - strand, within DvMF_2112at 2633.033 kb on + strand, within DvMF_2112at 2633.069 kb on + strand, within DvMF_2112at 2633.085 kb on + strand, within DvMF_2112at 2633.298 kb on - strandat 2633.385 kb on + strandat 2633.406 kb on + strandat 2633.709 kb on + strandat 2633.715 kb on - strand, within DvMF_2113at 2633.798 kb on - strand, within DvMF_2113at 2634.262 kb on + strand, within DvMF_2114at 2634.267 kb on + strand, within DvMF_2114at 2634.279 kb on + strand, within DvMF_2114at 2634.281 kb on + strand, within DvMF_2114

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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2,631,460 - -1.6
2,631,610 - DvMF_2111 0.31 -1.9
2,631,729 + DvMF_2111 0.55 +0.7
2,631,812 - DvMF_2111 0.72 -2.0
2,631,888 - DvMF_2111 0.87 -0.3
2,631,888 - DvMF_2111 0.87 -0.5
2,631,900 + DvMF_2111 0.89 -0.5
2,631,956 - -1.6
2,632,380 - +0.5
2,632,691 - DvMF_2112 0.33 -1.0
2,632,706 + DvMF_2112 0.35 -0.7
2,632,751 + DvMF_2112 0.40 -0.9
2,632,754 - DvMF_2112 0.40 -0.5
2,632,852 + DvMF_2112 0.51 -0.5
2,632,961 - DvMF_2112 0.63 -1.3
2,633,033 + DvMF_2112 0.70 -0.9
2,633,069 + DvMF_2112 0.74 -0.6
2,633,085 + DvMF_2112 0.76 -0.6
2,633,298 - -0.5
2,633,385 + -1.0
2,633,406 + -0.7
2,633,709 + -1.1
2,633,715 - DvMF_2113 0.12 -1.1
2,633,798 - DvMF_2113 0.56 -0.3
2,634,262 + DvMF_2114 0.18 -1.0
2,634,267 + DvMF_2114 0.19 -1.2
2,634,279 + DvMF_2114 0.20 +0.4
2,634,281 + DvMF_2114 0.21 -1.7

Or see this region's nucleotide sequence