Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2112
Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Tetracycline 0.0005 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,631,460 | - | -1.6 | |||
2,631,610 | - | DvMF_2111 | 0.31 | -1.9 | |
2,631,729 | + | DvMF_2111 | 0.55 | +0.7 | |
2,631,812 | - | DvMF_2111 | 0.72 | -2.0 | |
2,631,888 | - | DvMF_2111 | 0.87 | -0.3 | |
2,631,888 | - | DvMF_2111 | 0.87 | -0.5 | |
2,631,900 | + | DvMF_2111 | 0.89 | -0.5 | |
2,631,956 | - | -1.6 | |||
2,632,380 | - | +0.5 | |||
2,632,691 | - | DvMF_2112 | 0.33 | -1.0 | |
2,632,706 | + | DvMF_2112 | 0.35 | -0.7 | |
2,632,751 | + | DvMF_2112 | 0.40 | -0.9 | |
2,632,754 | - | DvMF_2112 | 0.40 | -0.5 | |
2,632,852 | + | DvMF_2112 | 0.51 | -0.5 | |
2,632,961 | - | DvMF_2112 | 0.63 | -1.3 | |
2,633,033 | + | DvMF_2112 | 0.70 | -0.9 | |
2,633,069 | + | DvMF_2112 | 0.74 | -0.6 | |
2,633,085 | + | DvMF_2112 | 0.76 | -0.6 | |
2,633,298 | - | -0.5 | |||
2,633,385 | + | -1.0 | |||
2,633,406 | + | -0.7 | |||
2,633,709 | + | -1.1 | |||
2,633,715 | - | DvMF_2113 | 0.12 | -1.1 | |
2,633,798 | - | DvMF_2113 | 0.56 | -0.3 | |
2,634,262 | + | DvMF_2114 | 0.18 | -1.0 | |
2,634,267 | + | DvMF_2114 | 0.19 | -1.2 | |
2,634,279 | + | DvMF_2114 | 0.20 | +0.4 | |
2,634,281 | + | DvMF_2114 | 0.21 | -1.7 |
Or see this region's nucleotide sequence