Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1900

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1899 and DvMF_1900 are separated by 474 nucleotidesDvMF_1900 and DvMF_1901 are separated by 10 nucleotidesDvMF_1901 and DvMF_1902 are separated by 129 nucleotides DvMF_1899: DvMF_1899 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,338,416 to 2,339,330 _1899 DvMF_1900: DvMF_1900 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,339,805 to 2,340,575 _1900 DvMF_1901: DvMF_1901 - transferase hexapeptide repeat containing protein (RefSeq), at 2,340,586 to 2,341,224 _1901 DvMF_1902: DvMF_1902 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 2,341,354 to 2,342,259 _1902 Position (kb) 2339 2340 2341Strain fitness (log2 ratio) -1 0 1 2at 2340.774 kb on - strand, within DvMF_1901at 2340.912 kb on - strand, within DvMF_1901at 2341.176 kb on + strandat 2341.238 kb on - strandat 2341.568 kb on - strand, within DvMF_1902

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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2,340,774 - DvMF_1901 0.29 -0.3
2,340,912 - DvMF_1901 0.51 +0.7
2,341,176 + -0.9
2,341,238 - -0.6
2,341,568 - DvMF_1902 0.24 +1.8

Or see this region's nucleotide sequence