Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1872

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1871 and DvMF_R0050 are separated by 249 nucleotidesDvMF_R0050 and DvMF_1872 are separated by 75 nucleotidesDvMF_1872 and DvMF_1873 are separated by 410 nucleotides DvMF_1871: DvMF_1871 - Rhodanese domain protein (RefSeq), at 2,297,570 to 2,298,598 _1871 DvMF_R0050: DvMF_R0050 - tRNA-Pro (RefSeq), at 2,298,848 to 2,298,924 _R0050 DvMF_1872: DvMF_1872 - Acetamidase/Formamidase (RefSeq), at 2,299,000 to 2,300,289 _1872 DvMF_1873: DvMF_1873 - Radical SAM domain protein (RefSeq), at 2,300,700 to 2,302,052 _1873 Position (kb) 2298 2299 2300 2301Strain fitness (log2 ratio) -2 -1 0 1at 2298.040 kb on - strand, within DvMF_1871at 2298.612 kb on - strandat 2298.716 kb on - strandat 2298.743 kb on + strandat 2299.016 kb on + strandat 2299.103 kb on + strandat 2299.211 kb on + strand, within DvMF_1872at 2299.234 kb on - strand, within DvMF_1872at 2299.484 kb on - strand, within DvMF_1872at 2299.664 kb on + strand, within DvMF_1872at 2299.816 kb on - strand, within DvMF_1872at 2299.820 kb on - strand, within DvMF_1872at 2299.983 kb on + strand, within DvMF_1872at 2300.102 kb on - strand, within DvMF_1872at 2300.159 kb on - strand, within DvMF_1872at 2300.274 kb on - strandat 2300.451 kb on + strandat 2300.722 kb on + strandat 2300.792 kb on + strandat 2300.921 kb on - strand, within DvMF_1873at 2301.076 kb on + strand, within DvMF_1873at 2301.076 kb on + strand, within DvMF_1873at 2301.076 kb on + strand, within DvMF_1873at 2301.076 kb on + strand, within DvMF_1873at 2301.084 kb on - strand, within DvMF_1873at 2301.113 kb on + strand, within DvMF_1873at 2301.197 kb on - strand, within DvMF_1873at 2301.264 kb on + strand, within DvMF_1873

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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2,298,040 - DvMF_1871 0.46 -0.9
2,298,612 - -0.4
2,298,716 - +1.6
2,298,743 + -0.6
2,299,016 + -1.2
2,299,103 + -1.2
2,299,211 + DvMF_1872 0.16 -2.0
2,299,234 - DvMF_1872 0.18 -0.7
2,299,484 - DvMF_1872 0.38 -0.6
2,299,664 + DvMF_1872 0.51 -0.2
2,299,816 - DvMF_1872 0.63 -0.6
2,299,820 - DvMF_1872 0.64 +0.1
2,299,983 + DvMF_1872 0.76 -1.0
2,300,102 - DvMF_1872 0.85 -1.6
2,300,159 - DvMF_1872 0.90 +0.6
2,300,274 - -0.5
2,300,451 + -0.5
2,300,722 + +0.3
2,300,792 + -0.7
2,300,921 - DvMF_1873 0.16 -0.5
2,301,076 + DvMF_1873 0.28 +1.1
2,301,076 + DvMF_1873 0.28 -0.5
2,301,076 + DvMF_1873 0.28 -1.4
2,301,076 + DvMF_1873 0.28 -0.6
2,301,084 - DvMF_1873 0.28 +0.3
2,301,113 + DvMF_1873 0.31 -0.0
2,301,197 - DvMF_1873 0.37 -0.9
2,301,264 + DvMF_1873 0.42 -0.1

Or see this region's nucleotide sequence