Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1260

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1259 and DvMF_1260 overlap by 4 nucleotidesDvMF_1260 and DvMF_1261 are separated by 316 nucleotides DvMF_1259: DvMF_1259 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,555,740 to 1,557,257 _1259 DvMF_1260: DvMF_1260 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,557,254 to 1,558,612 _1260 DvMF_1261: DvMF_1261 - putative phage repressor (RefSeq), at 1,558,929 to 1,559,639 _1261 Position (kb) 1557 1558 1559Strain fitness (log2 ratio) -2 -1 0 1at 1556.268 kb on - strand, within DvMF_1259at 1556.599 kb on + strand, within DvMF_1259at 1556.989 kb on - strand, within DvMF_1259at 1557.003 kb on + strand, within DvMF_1259at 1557.065 kb on - strand, within DvMF_1259at 1557.393 kb on + strand, within DvMF_1260at 1557.485 kb on - strand, within DvMF_1260at 1557.833 kb on + strand, within DvMF_1260at 1557.871 kb on - strand, within DvMF_1260at 1557.980 kb on - strand, within DvMF_1260at 1558.065 kb on + strand, within DvMF_1260at 1558.336 kb on - strand, within DvMF_1260at 1558.410 kb on + strand, within DvMF_1260at 1558.424 kb on + strand, within DvMF_1260

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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1,556,268 - DvMF_1259 0.35 -0.9
1,556,599 + DvMF_1259 0.57 -0.8
1,556,989 - DvMF_1259 0.82 -0.8
1,557,003 + DvMF_1259 0.83 -0.1
1,557,065 - DvMF_1259 0.87 -1.8
1,557,393 + DvMF_1260 0.10 -0.1
1,557,485 - DvMF_1260 0.17 -0.4
1,557,833 + DvMF_1260 0.43 -0.0
1,557,871 - DvMF_1260 0.45 +0.2
1,557,980 - DvMF_1260 0.53 -0.7
1,558,065 + DvMF_1260 0.60 -0.2
1,558,336 - DvMF_1260 0.80 -0.8
1,558,410 + DvMF_1260 0.85 +0.6
1,558,424 + DvMF_1260 0.86 -1.1

Or see this region's nucleotide sequence