Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1132

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1131 and DvMF_1132 overlap by 11 nucleotidesDvMF_1132 and DvMF_1133 are separated by 106 nucleotidesDvMF_1133 and DvMF_1134 are separated by 182 nucleotides DvMF_1131: DvMF_1131 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 1,387,508 to 1,389,010 _1131 DvMF_1132: DvMF_1132 - pseudouridine synthase (RefSeq), at 1,389,000 to 1,390,391 _1132 DvMF_1133: DvMF_1133 - hypothetical protein (RefSeq), at 1,390,498 to 1,391,184 _1133 DvMF_1134: DvMF_1134 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 1,391,367 to 1,393,082 _1134 Position (kb) 1388 1389 1390 1391Strain fitness (log2 ratio) -2 -1 0 1at 1388.069 kb on - strand, within DvMF_1131at 1388.320 kb on + strand, within DvMF_1131at 1388.692 kb on - strand, within DvMF_1131at 1388.825 kb on - strand, within DvMF_1131at 1388.960 kb on - strandat 1389.004 kb on + strandat 1389.136 kb on - strandat 1389.175 kb on + strand, within DvMF_1132at 1389.464 kb on + strand, within DvMF_1132at 1389.464 kb on + strand, within DvMF_1132at 1389.517 kb on + strand, within DvMF_1132at 1389.551 kb on + strand, within DvMF_1132at 1389.886 kb on + strand, within DvMF_1132at 1390.248 kb on - strand, within DvMF_1132at 1390.558 kb on - strandat 1390.624 kb on - strand, within DvMF_1133at 1390.695 kb on - strand, within DvMF_1133at 1390.746 kb on + strand, within DvMF_1133at 1391.254 kb on + strandat 1391.262 kb on - strandat 1391.327 kb on - strandat 1391.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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1,388,069 - DvMF_1131 0.37 -0.2
1,388,320 + DvMF_1131 0.54 +0.0
1,388,692 - DvMF_1131 0.79 -0.1
1,388,825 - DvMF_1131 0.88 +0.7
1,388,960 - +0.2
1,389,004 + +1.4
1,389,136 - -0.6
1,389,175 + DvMF_1132 0.13 -0.3
1,389,464 + DvMF_1132 0.33 +1.0
1,389,464 + DvMF_1132 0.33 -0.5
1,389,517 + DvMF_1132 0.37 +0.2
1,389,551 + DvMF_1132 0.40 +1.0
1,389,886 + DvMF_1132 0.64 -0.7
1,390,248 - DvMF_1132 0.90 -0.6
1,390,558 - -0.2
1,390,624 - DvMF_1133 0.18 -0.4
1,390,695 - DvMF_1133 0.29 -0.2
1,390,746 + DvMF_1133 0.36 -0.1
1,391,254 + -2.0
1,391,262 - -0.2
1,391,327 - -0.6
1,391,391 + -1.3

Or see this region's nucleotide sequence