Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0652

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0651 and DvMF_0652 are separated by 154 nucleotidesDvMF_0652 and DvMF_0653 are separated by 708 nucleotides DvMF_0651: DvMF_0651 - hypothetical protein (RefSeq), at 783,302 to 784,576 _0651 DvMF_0652: DvMF_0652 - Agmatine deiminase (RefSeq), at 784,731 to 785,843 _0652 DvMF_0653: DvMF_0653 - N-carbamoylputrescine amidase (RefSeq), at 786,552 to 787,493 _0653 Position (kb) 784 785 786Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 783.731 kb on - strand, within DvMF_0651at 783.951 kb on - strand, within DvMF_0651at 783.956 kb on - strand, within DvMF_0651at 784.324 kb on - strand, within DvMF_0651at 784.369 kb on + strand, within DvMF_0651at 784.375 kb on + strand, within DvMF_0651at 784.383 kb on - strand, within DvMF_0651at 784.472 kb on - strandat 784.893 kb on - strand, within DvMF_0652at 785.198 kb on - strand, within DvMF_0652at 785.371 kb on + strand, within DvMF_0652at 785.536 kb on + strand, within DvMF_0652at 785.564 kb on + strand, within DvMF_0652at 785.569 kb on + strand, within DvMF_0652at 785.845 kb on + strandat 785.892 kb on - strandat 785.907 kb on + strandat 786.044 kb on + strandat 786.162 kb on + strandat 786.218 kb on - strandat 786.410 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
remove
783,731 - DvMF_0651 0.34 -0.2
783,951 - DvMF_0651 0.51 +1.0
783,956 - DvMF_0651 0.51 -1.0
784,324 - DvMF_0651 0.80 -0.6
784,369 + DvMF_0651 0.84 -0.5
784,375 + DvMF_0651 0.84 -0.5
784,383 - DvMF_0651 0.85 -0.8
784,472 - -1.0
784,893 - DvMF_0652 0.15 -0.7
785,198 - DvMF_0652 0.42 -0.6
785,371 + DvMF_0652 0.58 -1.1
785,536 + DvMF_0652 0.72 -1.3
785,564 + DvMF_0652 0.75 -1.6
785,569 + DvMF_0652 0.75 -5.2
785,845 + -1.6
785,892 - -0.5
785,907 + -2.1
786,044 + -0.8
786,162 + -1.0
786,218 - -4.0
786,410 - -1.2

Or see this region's nucleotide sequence