Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0345 and DvMF_0346 are separated by 74 nucleotides DvMF_0346 and DvMF_0347 are separated by 163 nucleotides DvMF_0347 and DvMF_0348 are separated by 199 nucleotides DvMF_0348 and secG are separated by 38 nucleotides
DvMF_0345: DvMF_0345 - Inositol-phosphate phosphatase (RefSeq), at 404,295 to 405,161
_0345
DvMF_0346: DvMF_0346 - NUDIX hydrolase (RefSeq), at 405,236 to 405,784
_0346
DvMF_0347: DvMF_0347 - ribosomal-protein-alanine acetyltransferase (RefSeq), at 405,948 to 406,526
_0347
DvMF_0348: DvMF_0348 - Triose-phosphate isomerase (RefSeq), at 406,726 to 407,481
_0348
DvMF_0349: secG - preprotein translocase subunit SecG (RefSeq), at 407,520 to 407,864
secG
Position (kb) 405
406
407 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.204 kb on + strand at 405.234 kb on + strand at 405.242 kb on - strand at 405.315 kb on + strand, within DvMF_0346 at 405.336 kb on + strand, within DvMF_0346 at 405.618 kb on + strand, within DvMF_0346 at 405.618 kb on + strand, within DvMF_0346 at 405.683 kb on + strand, within DvMF_0346 at 405.691 kb on - strand, within DvMF_0346 at 405.809 kb on - strand at 405.809 kb on - strand at 405.953 kb on + strand at 406.241 kb on - strand, within DvMF_0347 at 406.473 kb on - strand at 406.511 kb on + strand at 406.529 kb on - strand at 406.529 kb on - strand at 406.646 kb on - strand at 406.696 kb on + strand at 406.714 kb on + strand at 407.179 kb on + strand, within DvMF_0348 at 407.238 kb on + strand, within DvMF_0348
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml remove 405,204 + -1.4 405,234 + -0.4 405,242 - -0.8 405,315 + DvMF_0346 0.14 -0.4 405,336 + DvMF_0346 0.18 -1.4 405,618 + DvMF_0346 0.70 -1.4 405,618 + DvMF_0346 0.70 -0.5 405,683 + DvMF_0346 0.81 -0.9 405,691 - DvMF_0346 0.83 -2.0 405,809 - -2.3 405,809 - -0.9 405,953 + -1.1 406,241 - DvMF_0347 0.51 +0.1 406,473 - -0.7 406,511 + -0.5 406,529 - -0.6 406,529 - -0.3 406,646 - +2.1 406,696 + -0.2 406,714 + -0.1 407,179 + DvMF_0348 0.60 -0.4 407,238 + DvMF_0348 0.68 +0.7
Or see this region's nucleotide sequence