Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03825 and CCNA_03826 overlap by 4 nucleotides CCNA_03826 and CCNA_03827 are separated by 149 nucleotides CCNA_03827 and CCNA_03828 are separated by 59 nucleotides CCNA_03828 and CCNA_03829 overlap by 4 nucleotides CCNA_03829 and CCNA_03830 are separated by 290 nucleotides
CCNA_03825: CCNA_03825 - hypothetical protein, at 3,991,412 to 3,991,774
_03825
CCNA_03826: CCNA_03826 - hypothetical protein, at 3,991,771 to 3,992,325
_03826
CCNA_03827: CCNA_03827 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 3,992,475 to 3,993,671
_03827
CCNA_03828: CCNA_03828 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 3,993,731 to 3,994,198
_03828
CCNA_03829: CCNA_03829 - hypothetical protein, at 3,994,195 to 3,994,335
_03829
CCNA_03830: CCNA_03830 - multidrug resistance protein A, efflux pump, at 3,994,626 to 3,995,735
_03830
Position (kb)
3992
3993
3994 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3991.489 kb on - strand, within CCNA_03825 at 3991.515 kb on + strand, within CCNA_03825 at 3991.515 kb on + strand, within CCNA_03825 at 3991.522 kb on + strand, within CCNA_03825 at 3991.552 kb on - strand, within CCNA_03825 at 3991.567 kb on + strand, within CCNA_03825 at 3991.609 kb on - strand, within CCNA_03825 at 3991.611 kb on + strand, within CCNA_03825 at 3991.614 kb on - strand, within CCNA_03825 at 3991.614 kb on - strand, within CCNA_03825 at 3991.619 kb on - strand, within CCNA_03825 at 3991.619 kb on - strand, within CCNA_03825 at 3991.656 kb on + strand, within CCNA_03825 at 3991.664 kb on - strand, within CCNA_03825 at 3991.696 kb on + strand, within CCNA_03825 at 3991.711 kb on + strand, within CCNA_03825 at 3991.711 kb on + strand, within CCNA_03825 at 3991.711 kb on + strand, within CCNA_03825 at 3991.711 kb on + strand, within CCNA_03825 at 3991.711 kb on + strand, within CCNA_03825 at 3991.711 kb on + strand, within CCNA_03825 at 3991.711 kb on + strand, within CCNA_03825 at 3991.711 kb on + strand, within CCNA_03825 at 3991.711 kb on + strand, within CCNA_03825 at 3991.719 kb on - strand, within CCNA_03825 at 3991.719 kb on - strand, within CCNA_03825 at 3991.719 kb on - strand, within CCNA_03825 at 3991.719 kb on - strand at 3991.719 kb on - strand, within CCNA_03825 at 3991.719 kb on - strand, within CCNA_03825 at 3991.719 kb on - strand, within CCNA_03825 at 3991.719 kb on - strand, within CCNA_03825 at 3991.722 kb on + strand, within CCNA_03825 at 3991.768 kb on + strand at 3991.775 kb on - strand at 3991.806 kb on - strand at 3991.833 kb on + strand, within CCNA_03826 at 3991.847 kb on - strand, within CCNA_03826 at 3991.858 kb on + strand, within CCNA_03826 at 3991.858 kb on + strand, within CCNA_03826 at 3991.858 kb on + strand, within CCNA_03826 at 3991.863 kb on + strand, within CCNA_03826 at 3991.866 kb on - strand, within CCNA_03826 at 3991.868 kb on + strand, within CCNA_03826 at 3991.868 kb on + strand, within CCNA_03826 at 3991.868 kb on + strand, within CCNA_03826 at 3991.871 kb on - strand, within CCNA_03826 at 3991.876 kb on - strand, within CCNA_03826 at 3991.876 kb on - strand, within CCNA_03826 at 3991.915 kb on + strand, within CCNA_03826 at 3991.936 kb on + strand, within CCNA_03826 at 3992.111 kb on + strand, within CCNA_03826 at 3992.119 kb on - strand, within CCNA_03826 at 3992.167 kb on - strand, within CCNA_03826 at 3992.169 kb on + strand, within CCNA_03826 at 3992.246 kb on - strand, within CCNA_03826 at 3992.250 kb on + strand, within CCNA_03826 at 3992.287 kb on + strand at 3992.411 kb on + strand at 3992.411 kb on + strand at 3992.419 kb on - strand at 3992.419 kb on - strand at 3992.436 kb on + strand at 3993.665 kb on + strand at 3993.667 kb on - strand at 3993.667 kb on - strand at 3993.673 kb on + strand at 3993.714 kb on + strand at 3994.238 kb on - strand, within CCNA_03829 at 3994.243 kb on + strand, within CCNA_03829 at 3994.251 kb on - strand, within CCNA_03829 at 3994.276 kb on + strand, within CCNA_03829 at 3994.276 kb on + strand, within CCNA_03829 at 3994.284 kb on - strand, within CCNA_03829 at 3994.289 kb on - strand, within CCNA_03829 at 3994.305 kb on + strand, within CCNA_03829 at 3994.313 kb on - strand, within CCNA_03829 at 3994.314 kb on - strand, within CCNA_03829 at 3994.322 kb on + strand at 3994.402 kb on + strand at 3994.480 kb on - strand at 3994.519 kb on + strand at 3994.622 kb on + strand at 3994.631 kb on - strand at 3994.644 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 3,991,489 - CCNA_03825 0.21 +1.0 3,991,515 + CCNA_03825 0.28 +1.7 3,991,515 + CCNA_03825 0.28 +4.0 3,991,522 + CCNA_03825 0.30 -1.2 3,991,552 - CCNA_03825 0.39 +3.3 3,991,567 + CCNA_03825 0.43 +0.3 3,991,609 - CCNA_03825 0.54 -0.4 3,991,611 + CCNA_03825 0.55 -0.4 3,991,614 - CCNA_03825 0.56 +0.3 3,991,614 - CCNA_03825 0.56 -1.8 3,991,619 - CCNA_03825 0.57 -0.4 3,991,619 - CCNA_03825 0.57 +3.3 3,991,656 + CCNA_03825 0.67 +0.8 3,991,664 - CCNA_03825 0.69 +1.1 3,991,696 + CCNA_03825 0.78 +1.3 3,991,711 + CCNA_03825 0.82 +0.9 3,991,711 + CCNA_03825 0.82 -1.2 3,991,711 + CCNA_03825 0.82 -2.7 3,991,711 + CCNA_03825 0.82 -1.1 3,991,711 + CCNA_03825 0.82 -1.1 3,991,711 + CCNA_03825 0.82 -1.0 3,991,711 + CCNA_03825 0.82 -1.7 3,991,711 + CCNA_03825 0.82 +2.7 3,991,711 + CCNA_03825 0.82 +0.2 3,991,719 - CCNA_03825 0.85 +1.5 3,991,719 - CCNA_03825 0.85 -0.2 3,991,719 - CCNA_03825 0.85 -0.6 3,991,719 - +0.3 3,991,719 - CCNA_03825 0.85 +2.3 3,991,719 - CCNA_03825 0.85 -0.3 3,991,719 - CCNA_03825 0.85 +0.6 3,991,719 - CCNA_03825 0.85 -1.8 3,991,722 + CCNA_03825 0.85 -3.1 3,991,768 + -1.7 3,991,775 - -0.0 3,991,806 - +2.5 3,991,833 + CCNA_03826 0.11 +2.3 3,991,847 - CCNA_03826 0.14 +3.4 3,991,858 + CCNA_03826 0.16 -1.5 3,991,858 + CCNA_03826 0.16 -2.2 3,991,858 + CCNA_03826 0.16 -0.9 3,991,863 + CCNA_03826 0.17 -1.0 3,991,866 - CCNA_03826 0.17 +0.7 3,991,868 + CCNA_03826 0.17 -3.2 3,991,868 + CCNA_03826 0.17 -1.5 3,991,868 + CCNA_03826 0.17 +0.5 3,991,871 - CCNA_03826 0.18 +0.6 3,991,876 - CCNA_03826 0.19 +0.3 3,991,876 - CCNA_03826 0.19 +1.6 3,991,915 + CCNA_03826 0.26 +0.1 3,991,936 + CCNA_03826 0.30 -2.0 3,992,111 + CCNA_03826 0.61 -2.6 3,992,119 - CCNA_03826 0.63 -1.1 3,992,167 - CCNA_03826 0.71 +0.3 3,992,169 + CCNA_03826 0.72 -0.9 3,992,246 - CCNA_03826 0.86 +1.5 3,992,250 + CCNA_03826 0.86 -1.7 3,992,287 + -0.2 3,992,411 + +0.9 3,992,411 + -1.2 3,992,419 - -0.1 3,992,419 - +0.8 3,992,436 + +1.2 3,993,665 + +0.8 3,993,667 - -1.4 3,993,667 - -2.1 3,993,673 + +1.9 3,993,714 + +1.4 3,994,238 - CCNA_03829 0.30 +0.9 3,994,243 + CCNA_03829 0.34 +2.2 3,994,251 - CCNA_03829 0.40 -0.4 3,994,276 + CCNA_03829 0.57 +1.1 3,994,276 + CCNA_03829 0.57 +0.1 3,994,284 - CCNA_03829 0.63 -0.1 3,994,289 - CCNA_03829 0.67 +0.2 3,994,305 + CCNA_03829 0.78 +0.3 3,994,313 - CCNA_03829 0.84 -0.0 3,994,314 - CCNA_03829 0.84 +0.5 3,994,322 + +0.3 3,994,402 + -0.5 3,994,480 - -1.7 3,994,519 + -0.5 3,994,622 + +1.3 3,994,631 - -1.7 3,994,644 + -0.6
Or see this region's nucleotide sequence