Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03344

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03342 and CCNA_03343 overlap by 4 nucleotidesCCNA_03343 and CCNA_03344 overlap by 11 nucleotidesCCNA_03344 and CCNA_03345 overlap by 4 nucleotidesCCNA_03345 and CCNA_03346 overlap by 4 nucleotides CCNA_03342: CCNA_03342 - short-chain acyl-CoA hydrolase, at 3,522,887 to 3,523,330 _03342 CCNA_03343: CCNA_03343 - FtsW related protein, at 3,523,327 to 3,524,193 _03343 CCNA_03344: CCNA_03344 - Holliday junction DNA helicase RuvB, at 3,524,183 to 3,525,223 _03344 CCNA_03345: CCNA_03345 - Holliday junction DNA helicase RuvA, at 3,525,220 to 3,525,837 _03345 CCNA_03346: CCNA_03346 - crossover junction endodeoxyribonuclease ruvC, at 3,525,834 to 3,526,355 _03346 Position (kb) 3524 3525 3526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3523.224 kb on + strand, within CCNA_03342at 3523.317 kb on - strandat 3523.337 kb on + strandat 3523.342 kb on + strandat 3523.345 kb on - strandat 3523.345 kb on - strandat 3523.375 kb on - strandat 3523.381 kb on - strandat 3523.385 kb on + strandat 3523.390 kb on + strandat 3523.414 kb on + strand, within CCNA_03343at 3523.422 kb on - strand, within CCNA_03343at 3523.422 kb on - strand, within CCNA_03343at 3523.483 kb on + strand, within CCNA_03343at 3523.510 kb on - strand, within CCNA_03343at 3523.611 kb on - strand, within CCNA_03343at 3523.611 kb on - strand, within CCNA_03343at 3523.627 kb on - strand, within CCNA_03343at 3523.632 kb on - strand, within CCNA_03343at 3523.647 kb on + strand, within CCNA_03343at 3523.650 kb on + strand, within CCNA_03343at 3523.697 kb on - strand, within CCNA_03343at 3523.701 kb on - strand, within CCNA_03343at 3523.733 kb on + strand, within CCNA_03343at 3523.751 kb on + strand, within CCNA_03343at 3523.751 kb on + strand, within CCNA_03343at 3523.751 kb on + strand, within CCNA_03343at 3523.759 kb on - strand, within CCNA_03343at 3523.759 kb on - strand, within CCNA_03343at 3523.759 kb on - strand, within CCNA_03343at 3523.764 kb on - strand, within CCNA_03343at 3523.787 kb on + strand, within CCNA_03343at 3523.787 kb on + strand, within CCNA_03343at 3523.787 kb on + strand, within CCNA_03343at 3523.790 kb on - strand, within CCNA_03343at 3523.795 kb on - strand, within CCNA_03343at 3523.795 kb on - strand, within CCNA_03343at 3523.795 kb on - strand, within CCNA_03343at 3523.795 kb on - strand, within CCNA_03343at 3523.806 kb on + strand, within CCNA_03343at 3523.809 kb on - strand, within CCNA_03343at 3523.860 kb on - strand, within CCNA_03343at 3523.875 kb on - strand, within CCNA_03343at 3523.885 kb on + strand, within CCNA_03343at 3523.901 kb on - strand, within CCNA_03343at 3523.913 kb on + strand, within CCNA_03343at 3523.916 kb on - strand, within CCNA_03343at 3523.963 kb on - strand, within CCNA_03343at 3523.968 kb on - strand, within CCNA_03343at 3524.020 kb on + strand, within CCNA_03343at 3524.115 kb on + strandat 3524.123 kb on - strandat 3524.123 kb on - strandat 3524.127 kb on + strandat 3524.134 kb on + strandat 3524.167 kb on + strandat 3524.180 kb on + strandat 3524.180 kb on + strandat 3524.180 kb on + strandat 3524.180 kb on - strandat 3524.188 kb on - strandat 3524.188 kb on - strandat 3524.188 kb on - strandat 3524.236 kb on + strandat 3524.246 kb on - strandat 3524.296 kb on + strand, within CCNA_03344at 3524.304 kb on - strand, within CCNA_03344at 3524.325 kb on - strand, within CCNA_03344at 3524.442 kb on - strand, within CCNA_03344at 3524.474 kb on + strand, within CCNA_03344at 3524.661 kb on - strand, within CCNA_03344at 3524.779 kb on - strand, within CCNA_03344at 3524.783 kb on - strand, within CCNA_03344at 3524.997 kb on - strand, within CCNA_03344at 3525.032 kb on - strand, within CCNA_03344at 3525.050 kb on - strand, within CCNA_03344at 3525.109 kb on + strand, within CCNA_03344at 3525.122 kb on - strandat 3525.122 kb on - strandat 3525.253 kb on - strandat 3525.253 kb on - strandat 3525.253 kb on - strandat 3525.478 kb on + strand, within CCNA_03345at 3525.499 kb on - strand, within CCNA_03345at 3525.590 kb on + strand, within CCNA_03345at 3525.615 kb on + strand, within CCNA_03345at 3525.658 kb on - strand, within CCNA_03345at 3525.710 kb on - strand, within CCNA_03345at 3525.717 kb on + strand, within CCNA_03345at 3525.842 kb on + strandat 3525.907 kb on + strand, within CCNA_03346at 3526.026 kb on + strand, within CCNA_03346at 3526.044 kb on - strand, within CCNA_03346at 3526.063 kb on - strand, within CCNA_03346at 3526.124 kb on - strand, within CCNA_03346at 3526.176 kb on + strand, within CCNA_03346at 3526.176 kb on - strand, within CCNA_03346

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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3,523,224 + CCNA_03342 0.76 -2.5
3,523,317 - -0.1
3,523,337 + -0.8
3,523,342 + -0.8
3,523,345 - +0.6
3,523,345 - +1.9
3,523,375 - -0.2
3,523,381 - +0.7
3,523,385 + -0.9
3,523,390 + -2.1
3,523,414 + CCNA_03343 0.10 -1.8
3,523,422 - CCNA_03343 0.11 +1.0
3,523,422 - CCNA_03343 0.11 -0.3
3,523,483 + CCNA_03343 0.18 -2.2
3,523,510 - CCNA_03343 0.21 -0.6
3,523,611 - CCNA_03343 0.33 +0.0
3,523,611 - CCNA_03343 0.33 -1.6
3,523,627 - CCNA_03343 0.35 +0.5
3,523,632 - CCNA_03343 0.35 +1.4
3,523,647 + CCNA_03343 0.37 -1.1
3,523,650 + CCNA_03343 0.37 +1.5
3,523,697 - CCNA_03343 0.43 +0.5
3,523,701 - CCNA_03343 0.43 +0.2
3,523,733 + CCNA_03343 0.47 -0.5
3,523,751 + CCNA_03343 0.49 -0.3
3,523,751 + CCNA_03343 0.49 -1.2
3,523,751 + CCNA_03343 0.49 +0.5
3,523,759 - CCNA_03343 0.50 +0.7
3,523,759 - CCNA_03343 0.50 +0.9
3,523,759 - CCNA_03343 0.50 +0.5
3,523,764 - CCNA_03343 0.50 +2.3
3,523,787 + CCNA_03343 0.53 +0.1
3,523,787 + CCNA_03343 0.53 -1.7
3,523,787 + CCNA_03343 0.53 -2.2
3,523,790 - CCNA_03343 0.53 +0.1
3,523,795 - CCNA_03343 0.54 -0.4
3,523,795 - CCNA_03343 0.54 +0.1
3,523,795 - CCNA_03343 0.54 +0.6
3,523,795 - CCNA_03343 0.54 -0.3
3,523,806 + CCNA_03343 0.55 -2.1
3,523,809 - CCNA_03343 0.56 -0.6
3,523,860 - CCNA_03343 0.61 +1.0
3,523,875 - CCNA_03343 0.63 -1.9
3,523,885 + CCNA_03343 0.64 +1.2
3,523,901 - CCNA_03343 0.66 +0.9
3,523,913 + CCNA_03343 0.68 -0.1
3,523,916 - CCNA_03343 0.68 +0.3
3,523,963 - CCNA_03343 0.73 +0.8
3,523,968 - CCNA_03343 0.74 +1.1
3,524,020 + CCNA_03343 0.80 -0.6
3,524,115 + -0.7
3,524,123 - -1.8
3,524,123 - +0.7
3,524,127 + -0.1
3,524,134 + -1.8
3,524,167 + +0.3
3,524,180 + -2.9
3,524,180 + +1.5
3,524,180 + -0.2
3,524,180 - +0.5
3,524,188 - -0.7
3,524,188 - -0.7
3,524,188 - -0.2
3,524,236 + -0.4
3,524,246 - +1.5
3,524,296 + CCNA_03344 0.11 +1.5
3,524,304 - CCNA_03344 0.12 -1.4
3,524,325 - CCNA_03344 0.14 -0.5
3,524,442 - CCNA_03344 0.25 -0.4
3,524,474 + CCNA_03344 0.28 -0.8
3,524,661 - CCNA_03344 0.46 +0.4
3,524,779 - CCNA_03344 0.57 -1.1
3,524,783 - CCNA_03344 0.58 -1.5
3,524,997 - CCNA_03344 0.78 -0.1
3,525,032 - CCNA_03344 0.82 -1.5
3,525,050 - CCNA_03344 0.83 -3.7
3,525,109 + CCNA_03344 0.89 -2.3
3,525,122 - -0.2
3,525,122 - -1.1
3,525,253 - -0.5
3,525,253 - -0.1
3,525,253 - -2.1
3,525,478 + CCNA_03345 0.42 -1.5
3,525,499 - CCNA_03345 0.45 -0.3
3,525,590 + CCNA_03345 0.60 -0.8
3,525,615 + CCNA_03345 0.64 -0.5
3,525,658 - CCNA_03345 0.71 -0.3
3,525,710 - CCNA_03345 0.79 +2.3
3,525,717 + CCNA_03345 0.80 -1.9
3,525,842 + +0.5
3,525,907 + CCNA_03346 0.14 -2.5
3,526,026 + CCNA_03346 0.37 -1.8
3,526,044 - CCNA_03346 0.40 -1.1
3,526,063 - CCNA_03346 0.44 -1.1
3,526,124 - CCNA_03346 0.56 -0.1
3,526,176 + CCNA_03346 0.66 -2.1
3,526,176 - CCNA_03346 0.66 -2.5

Or see this region's nucleotide sequence