Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00010 and CCNA_00011 are separated by 162 nucleotides CCNA_00011 and CCNA_00012 are separated by 86 nucleotides
CCNA_00010: CCNA_00010 - chaperone protein DnaK, at 8,165 to 10,060
_00010
CCNA_00011: CCNA_00011 - chaperone protein DnaJ, at 10,223 to 11,380
_00011
CCNA_00012: CCNA_00012 - DNA mismatch repair protein MutS, at 11,467 to 14,178
_00012
Position (kb) 10
11
12 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 9.904 kb on + strand at 9.928 kb on + strand at 10.006 kb on - strand at 10.054 kb on + strand at 10.115 kb on + strand at 10.145 kb on + strand at 10.152 kb on + strand at 10.157 kb on + strand at 10.759 kb on - strand, within CCNA_00011 at 10.963 kb on + strand, within CCNA_00011 at 11.012 kb on + strand, within CCNA_00011 at 11.057 kb on + strand, within CCNA_00011 at 11.096 kb on + strand, within CCNA_00011 at 11.155 kb on + strand, within CCNA_00011 at 11.184 kb on - strand, within CCNA_00011 at 11.190 kb on - strand, within CCNA_00011 at 11.247 kb on + strand, within CCNA_00011 at 11.273 kb on + strand at 11.317 kb on + strand at 11.317 kb on - strand at 11.325 kb on - strand at 11.344 kb on + strand at 11.361 kb on - strand at 11.366 kb on + strand at 11.372 kb on - strand at 11.382 kb on - strand at 11.383 kb on - strand at 11.446 kb on + strand at 11.497 kb on - strand at 11.646 kb on - strand at 11.716 kb on + strand at 11.751 kb on + strand, within CCNA_00012 at 11.775 kb on + strand, within CCNA_00012 at 11.807 kb on + strand, within CCNA_00012 at 11.807 kb on + strand, within CCNA_00012 at 11.813 kb on + strand, within CCNA_00012 at 11.815 kb on - strand, within CCNA_00012 at 11.934 kb on - strand, within CCNA_00012 at 11.955 kb on + strand, within CCNA_00012 at 11.967 kb on + strand, within CCNA_00012 at 11.976 kb on - strand, within CCNA_00012 at 11.991 kb on + strand, within CCNA_00012 at 11.999 kb on - strand, within CCNA_00012 at 12.002 kb on + strand, within CCNA_00012 at 12.024 kb on - strand, within CCNA_00012 at 12.027 kb on + strand, within CCNA_00012 at 12.029 kb on + strand, within CCNA_00012 at 12.035 kb on - strand, within CCNA_00012 at 12.081 kb on - strand, within CCNA_00012 at 12.082 kb on + strand, within CCNA_00012 at 12.082 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.108 kb on + strand, within CCNA_00012 at 12.111 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.121 kb on + strand, within CCNA_00012 at 12.123 kb on - strand, within CCNA_00012 at 12.126 kb on + strand, within CCNA_00012 at 12.134 kb on - strand, within CCNA_00012 at 12.150 kb on - strand, within CCNA_00012 at 12.162 kb on + strand, within CCNA_00012 at 12.170 kb on - strand, within CCNA_00012 at 12.170 kb on - strand, within CCNA_00012 at 12.172 kb on + strand, within CCNA_00012 at 12.172 kb on + strand, within CCNA_00012 at 12.178 kb on + strand, within CCNA_00012 at 12.205 kb on - strand, within CCNA_00012 at 12.221 kb on + strand, within CCNA_00012 at 12.316 kb on - strand, within CCNA_00012 at 12.349 kb on - strand, within CCNA_00012
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 9,904 + +1.1 9,928 + -2.0 10,006 - -3.1 10,054 + -0.1 10,115 + +0.6 10,145 + -1.3 10,152 + +0.9 10,157 + -1.4 10,759 - CCNA_00011 0.46 -1.6 10,963 + CCNA_00011 0.64 -3.3 11,012 + CCNA_00011 0.68 -3.4 11,057 + CCNA_00011 0.72 -2.7 11,096 + CCNA_00011 0.75 -5.2 11,155 + CCNA_00011 0.80 -2.5 11,184 - CCNA_00011 0.83 -1.8 11,190 - CCNA_00011 0.84 -0.6 11,247 + CCNA_00011 0.88 -5.8 11,273 + -5.9 11,317 + -2.1 11,317 - -1.4 11,325 - -2.1 11,344 + -2.5 11,361 - -1.3 11,366 + +1.0 11,372 - -3.4 11,382 - -1.0 11,383 - -0.4 11,446 + +0.9 11,497 - +0.4 11,646 - -0.3 11,716 + +1.5 11,751 + CCNA_00012 0.10 +0.5 11,775 + CCNA_00012 0.11 +0.6 11,807 + CCNA_00012 0.13 +0.9 11,807 + CCNA_00012 0.13 +1.9 11,813 + CCNA_00012 0.13 +1.1 11,815 - CCNA_00012 0.13 -1.4 11,934 - CCNA_00012 0.17 +1.3 11,955 + CCNA_00012 0.18 -0.8 11,967 + CCNA_00012 0.18 +1.6 11,976 - CCNA_00012 0.19 +1.4 11,991 + CCNA_00012 0.19 +0.3 11,999 - CCNA_00012 0.20 +0.3 12,002 + CCNA_00012 0.20 +0.4 12,024 - CCNA_00012 0.21 +1.4 12,027 + CCNA_00012 0.21 +0.2 12,029 + CCNA_00012 0.21 +0.6 12,035 - CCNA_00012 0.21 +1.7 12,081 - CCNA_00012 0.23 +2.4 12,082 + CCNA_00012 0.23 +1.0 12,082 + CCNA_00012 0.23 +1.8 12,098 + CCNA_00012 0.23 +1.0 12,098 + CCNA_00012 0.23 -0.2 12,098 + CCNA_00012 0.23 +1.3 12,108 + CCNA_00012 0.24 +1.9 12,111 - CCNA_00012 0.24 -0.0 12,116 - CCNA_00012 0.24 -0.1 12,116 - CCNA_00012 0.24 +0.4 12,116 - CCNA_00012 0.24 +0.8 12,116 - CCNA_00012 0.24 +0.4 12,121 + CCNA_00012 0.24 +0.8 12,123 - CCNA_00012 0.24 -0.5 12,126 + CCNA_00012 0.24 +3.3 12,134 - CCNA_00012 0.25 +0.2 12,150 - CCNA_00012 0.25 -1.8 12,162 + CCNA_00012 0.26 +0.1 12,170 - CCNA_00012 0.26 -0.5 12,170 - CCNA_00012 0.26 +0.9 12,172 + CCNA_00012 0.26 +0.1 12,172 + CCNA_00012 0.26 +0.2 12,178 + CCNA_00012 0.26 +0.9 12,205 - CCNA_00012 0.27 -0.0 12,221 + CCNA_00012 0.28 +1.0 12,316 - CCNA_00012 0.31 +0.5 12,349 - CCNA_00012 0.33 +0.0
Or see this region's nucleotide sequence