Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS21100

Experiment: CDM1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1
2,115,200	-		BBR_RS19335	0.62	+0.9
2,115,235	-		BBR_RS19335	0.66	-3.1
2,115,269	+		BBR_RS19335	0.69	-1.3
2,115,269	+		BBR_RS19335	0.69	-2.5
2,115,269	+		BBR_RS19335	0.69	-1.6
2,115,269	+		BBR_RS19335	0.69	+0.0
2,115,269	+		BBR_RS19335	0.69	-0.9
2,115,277	-		BBR_RS19335	0.69	+1.1
2,115,277	-		BBR_RS19335	0.69	-0.4
2,115,277	-		BBR_RS19335	0.69	-2.0
2,115,297	+		BBR_RS19335	0.71	-1.9
2,115,309	-		BBR_RS19335	0.72	-0.7
2,115,328	+		BBR_RS19335	0.74	+0.5
2,115,335	+		BBR_RS19335	0.75	-2.9
2,115,350	+		BBR_RS19335	0.76	-1.2
2,115,351	-		BBR_RS19335	0.76	+0.0
2,115,351	-		BBR_RS19335	0.76	-0.8
2,115,353	-		BBR_RS19335	0.77	+0.4
2,115,366	-		BBR_RS19335	0.78	+1.3
2,115,388	-		BBR_RS19335	0.80	-0.3
2,115,406	-		BBR_RS19335	0.82	-0.5
2,115,425	-		BBR_RS19335	0.83	+0.9
2,115,437	+		BBR_RS19335	0.84	-1.6
2,115,447	+		BBR_RS19335	0.85	-0.1
2,115,447	-		BBR_RS19335	0.85	-0.6
2,115,454	+		BBR_RS19335	0.86	-0.4
2,115,463	-		BBR_RS19335	0.87	+1.2
2,115,479	+		BBR_RS19335	0.88	-3.4
2,115,487	-		BBR_RS19335	0.89	-0.8
2,115,519	-				-0.8
2,115,519	-				+0.3
2,115,519	-				-0.3
2,115,533	-				+1.1
2,115,572	+				-2.6
2,115,574	+				+0.2
2,115,574	+				-0.6
2,115,577	+				-2.5
2,115,577	+				-0.6
2,115,577	+				+0.0
2,115,580	-				-0.8
2,115,580	-				-0.9
2,115,580	-				-1.3
2,115,588	-				-0.5
2,115,593	-				+0.6
2,115,625	+				+0.4
2,115,633	-				-0.3
2,115,657	+				-2.9
2,115,665	-				-2.0
2,115,671	+		BBR_RS21090	0.11	-1.2
2,115,762	+		BBR_RS21090	0.43	+0.8
2,115,762	+		BBR_RS21090	0.43	-1.2
2,115,762	+		BBR_RS21090	0.43	-1.2
2,115,764	+		BBR_RS21090	0.44	-1.4
2,115,764	+		BBR_RS21090	0.44	-1.0
2,115,775	-		BBR_RS21090	0.48	-0.1
2,115,786	-		BBR_RS21090	0.52	+1.1
2,115,786	-		BBR_RS21090	0.52	-0.6
2,115,788	+		BBR_RS21090	0.52	-1.9
2,115,792	-		BBR_RS21090	0.54	-0.6
2,115,794	-		BBR_RS21090	0.54	-0.4
2,115,794	-		BBR_RS21090	0.54	+0.1
2,115,794	-		BBR_RS21090	0.54	+0.6
2,115,796	-		BBR_RS21090	0.55	+0.5
2,115,832	+		BBR_RS21090	0.68	+0.5
2,115,836	-		BBR_RS21090	0.69	+0.6
2,115,850	-		BBR_RS21090	0.74	+0.9
2,115,858	+		BBR_RS21090	0.77	+1.5
2,115,859	-		BBR_RS21090	0.77	-0.9
2,115,863	+		BBR_RS21090	0.79	-0.5
2,115,868	+		BBR_RS21090	0.80	-2.0
2,115,868	-		BBR_RS21090	0.80	-0.4
2,115,870	+		BBR_RS21090	0.81	+1.4
2,115,870	+		BBR_RS21090	0.81	-2.4
2,115,871	-		BBR_RS21090	0.81	-0.7
2,115,873	+		BBR_RS21090	0.82	-2.1
2,115,873	+		BBR_RS21090	0.82	+0.9
2,115,873	+		BBR_RS21090	0.82	-0.5
2,115,873	+		BBR_RS21090	0.82	-1.2
2,115,873	+		BBR_RS21090	0.82	-2.2
2,115,873	+		BBR_RS21090	0.82	-0.4
2,115,873	+		BBR_RS21090	0.82	+0.0
2,115,875	+		BBR_RS21090	0.83	+0.7
2,115,876	-		BBR_RS21090	0.83	+0.1
2,115,876	-		BBR_RS21090	0.83	-0.3
2,115,876	-		BBR_RS21090	0.83	-0.0
2,115,878	+		BBR_RS21090	0.84	-1.4
2,115,878	-		BBR_RS21090	0.84	-2.7
2,115,881	-		BBR_RS21090	0.85	+0.0
2,115,881	-		BBR_RS21090	0.85	-0.5
2,115,883	-		BBR_RS21090	0.86	+1.1
2,115,886	-		BBR_RS21090	0.87	+0.3
2,115,899	+				-3.0
2,115,900	+				-1.2
2,115,907	-				+0.4
2,115,908	-				-0.7
2,115,914	-				-0.4
2,115,944	+				-2.5
2,115,944	+				-1.9
2,115,949	+				-1.8
2,115,952	-				+0.0
2,115,963	-				-2.7
2,115,970	+				-2.3
2,115,971	+				-1.3
2,115,979	-				-1.5
2,115,996	-				+0.9
2,115,998	+				-1.3
2,116,018	+		BBR_RS21095	0.19	-2.3
2,116,029	+		BBR_RS21095	0.25	-0.0
2,116,037	-		BBR_RS21095	0.30	+1.9
2,116,049	+		BBR_RS21095	0.36	+0.4
2,116,062	+		BBR_RS21095	0.43	+1.1
2,116,136	+		BBR_RS21095	0.83	-3.1
2,116,144	-		BBR_RS21095	0.87	-0.4
2,116,144	-		BBR_RS21095	0.87	+0.0
2,116,183	-		BBR_RS21100	0.12	-3.2
2,116,207	+		BBR_RS21100	0.26	-2.0
2,116,215	-		BBR_RS21100	0.31	-0.8
2,116,241	-		BBR_RS21100	0.47	+0.1
2,116,282	-		BBR_RS21100	0.72	+0.0
2,116,289	-		BBR_RS21100	0.76	-1.4
2,116,312	+				-1.1
2,116,320	-				+0.8
2,116,322	+				-0.9
2,116,322	+				-0.9
2,116,326	+				-3.3
2,116,330	-				-1.7
2,116,330	-				-1.1
2,116,330	-				+1.0
2,116,331	-				-0.4
2,116,331	-				+0.2
2,116,358	+				+0.6
2,116,358	+				-0.9
2,116,373	+		BBR_RS21105	0.10	+0.9
2,116,373	+		BBR_RS21105	0.10	-2.6
2,116,376	-		BBR_RS21105	0.11	+0.4
2,116,376	-		BBR_RS21105	0.11	+0.2
2,116,388	-		BBR_RS21105	0.13	-0.9
2,116,402	-		BBR_RS21105	0.15	+0.2
2,116,407	+		BBR_RS21105	0.16	-0.3
2,116,407	+		BBR_RS21105	0.16	-0.5
2,116,415	-		BBR_RS21105	0.17	+0.0
2,116,415	-		BBR_RS21105	0.17	-2.0
2,116,415	-		BBR_RS21105	0.17	-0.5
2,116,426	-		BBR_RS21105	0.19	+0.2
2,116,429	+		BBR_RS21105	0.19	-1.6
2,116,429	+		BBR_RS21105	0.19	-0.7
2,116,437	-		BBR_RS21105	0.21	-1.0
2,116,459	+		BBR_RS21105	0.24	-2.6
2,116,481	-		BBR_RS21105	0.27	-0.5
2,116,486	+		BBR_RS21105	0.28	-1.7
2,116,486	+		BBR_RS21105	0.28	-0.5
2,116,520	-		BBR_RS21105	0.34	-0.8
2,116,525	-		BBR_RS21105	0.34	+0.1
2,116,535	+		BBR_RS21105	0.36	-3.3
2,116,550	-		BBR_RS21105	0.38	-1.0
2,116,550	-		BBR_RS21105	0.38	-0.6
2,116,550	-		BBR_RS21105	0.38	-0.2
2,116,557	+		BBR_RS21105	0.39	-1.4
2,116,566	+		BBR_RS21105	0.41	-1.3
2,116,566	+		BBR_RS21105	0.41	+0.1
2,116,571	+		BBR_RS21105	0.42	-0.1
2,116,574	-		BBR_RS21105	0.42	+0.7
2,116,574	-		BBR_RS21105	0.42	+0.5
2,116,574	-		BBR_RS21105	0.42	+1.7
2,116,579	-		BBR_RS21105	0.43	+0.7
2,116,584	-		BBR_RS21105	0.44	+0.9
2,116,585	+		BBR_RS21105	0.44	+0.3
2,116,585	-		BBR_RS21105	0.44	+0.5
2,116,594	+		BBR_RS21105	0.45	-2.1
2,116,607	-		BBR_RS21105	0.47	-2.4
2,116,607	-		BBR_RS21105	0.47	-1.0
2,116,607	-		BBR_RS21105	0.47	+0.8
2,116,637	-		BBR_RS21105	0.52	+0.3
2,116,653	-		BBR_RS21105	0.55	+0.6
2,116,663	-		BBR_RS21105	0.56	-0.5
2,116,674	-		BBR_RS21105	0.58	-2.0
2,116,674	-		BBR_RS21105	0.58	-0.2
2,116,684	+		BBR_RS21105	0.60	-1.8
2,116,704	+		BBR_RS21105	0.63	+0.1
2,116,704	+		BBR_RS21105	0.63	+0.8
2,116,712	-		BBR_RS21105	0.64	+1.2
2,116,716	+		BBR_RS21105	0.65	+0.3
2,116,734	-		BBR_RS21105	0.67	+1.6
2,116,753	+		BBR_RS21105	0.70	-1.0
2,116,782	+		BBR_RS21105	0.75	-1.9
2,116,782	+		BBR_RS21105	0.75	-0.9
2,116,790	-		BBR_RS21105	0.76	-1.9
2,116,790	-		BBR_RS21105	0.76	+2.3
2,116,796	+		BBR_RS21105	0.77	-0.4
2,116,801	+		BBR_RS21105	0.78	-2.2
2,116,801	+		BBR_RS21105	0.78	+0.3
2,116,801	+		BBR_RS21105	0.78	-0.7
2,116,820	+		BBR_RS21105	0.81	+0.0
2,116,827	+		BBR_RS21105	0.82	-2.2
2,116,846	-		BBR_RS21105	0.85	-0.5
2,116,851	+		BBR_RS21105	0.86	-0.5
2,116,888	+				-1.8
2,116,900	+				-0.0
2,116,903	-				-0.7
2,116,908	-				+1.0
2,116,927	-				-0.1
2,116,929	+				-0.3
2,116,929	+				-0.6
2,116,937	-				-1.7
2,116,986	+				-1.1
2,117,030	+				-0.7
2,117,054	-				+1.1
2,117,059	-				+0.7
2,117,060	-				+0.5
2,117,081	-				+0.9
2,117,086	+				-1.5
2,117,109	+				+0.3
2,117,118	+				-1.7
2,117,118	+				-0.4
2,117,126	-				-0.5
2,117,130	+				+1.0
2,117,179	-				+1.2
2,117,197	+				-3.4
2,117,197	+				-1.5
2,117,225	-				-0.4
2,117,225	-				+0.1
2,117,261	-		BBR_RS19345	0.50	-0.4
2,117,263	-		BBR_RS19345	0.53	+0.6
2,117,268	-		BBR_RS19345	0.59	+0.0
2,117,274	+		BBR_RS19345	0.67	-3.1
2,117,303	-				-1.6