Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20875

Experiment: CDM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14930 and BBR_RS20875 are separated by 175 nucleotidesBBR_RS20875 and BBR_RS14940 are separated by 34 nucleotides BBR_RS14930: BBR_RS14930 - DNA-binding protein, also contains divergent AAA domain for ATP binding (DNA helicase), at 1,123,984 to 1,125,462 _RS14930 BBR_RS20875: BBR_RS20875 - hypothetical protein, at 1,125,638 to 1,126,243 _RS20875 BBR_RS14940: BBR_RS14940 - hypothetical protein, at 1,126,278 to 1,127,498 _RS14940 Position (kb) 1125 1126 1127Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1124.680 kb on + strand, within BBR_RS14930at 1124.687 kb on + strand, within BBR_RS14930at 1124.805 kb on + strand, within BBR_RS14930at 1124.805 kb on + strand, within BBR_RS14930at 1124.825 kb on - strand, within BBR_RS14930at 1124.897 kb on + strand, within BBR_RS14930at 1124.946 kb on + strand, within BBR_RS14930at 1125.035 kb on - strand, within BBR_RS14930at 1125.035 kb on - strand, within BBR_RS14930at 1125.038 kb on + strand, within BBR_RS14930at 1125.038 kb on - strand, within BBR_RS14930at 1125.072 kb on - strand, within BBR_RS14930at 1125.103 kb on + strand, within BBR_RS14930at 1125.175 kb on + strand, within BBR_RS14930at 1125.184 kb on - strand, within BBR_RS14930at 1125.196 kb on - strand, within BBR_RS14930at 1125.275 kb on - strand, within BBR_RS14930at 1125.300 kb on - strand, within BBR_RS14930at 1125.301 kb on + strand, within BBR_RS14930at 1125.336 kb on + strandat 1125.344 kb on - strandat 1125.344 kb on - strandat 1125.350 kb on + strandat 1125.380 kb on + strandat 1125.427 kb on - strandat 1125.429 kb on + strandat 1125.561 kb on - strandat 1125.612 kb on + strandat 1125.638 kb on + strandat 1125.642 kb on - strandat 1125.696 kb on + strandat 1125.745 kb on + strand, within BBR_RS20875at 1125.871 kb on + strand, within BBR_RS20875at 1125.881 kb on + strand, within BBR_RS20875at 1125.884 kb on - strand, within BBR_RS20875at 1125.927 kb on + strand, within BBR_RS20875at 1125.929 kb on - strand, within BBR_RS20875at 1125.954 kb on + strand, within BBR_RS20875at 1125.998 kb on - strand, within BBR_RS20875at 1126.002 kb on + strand, within BBR_RS20875at 1126.002 kb on + strand, within BBR_RS20875at 1126.009 kb on + strand, within BBR_RS20875at 1126.010 kb on - strand, within BBR_RS20875at 1126.037 kb on - strand, within BBR_RS20875at 1126.083 kb on - strand, within BBR_RS20875at 1126.149 kb on + strand, within BBR_RS20875at 1126.149 kb on + strand, within BBR_RS20875at 1126.157 kb on + strand, within BBR_RS20875at 1126.204 kb on - strandat 1126.246 kb on - strandat 1126.272 kb on - strandat 1126.293 kb on + strandat 1126.299 kb on + strandat 1126.299 kb on + strandat 1126.354 kb on - strandat 1126.408 kb on - strand, within BBR_RS14940at 1126.438 kb on - strand, within BBR_RS14940at 1126.446 kb on + strand, within BBR_RS14940at 1126.484 kb on - strand, within BBR_RS14940at 1126.484 kb on - strand, within BBR_RS14940at 1126.492 kb on - strand, within BBR_RS14940at 1126.527 kb on + strand, within BBR_RS14940at 1126.535 kb on + strand, within BBR_RS14940at 1126.610 kb on + strand, within BBR_RS14940at 1126.799 kb on - strand, within BBR_RS14940at 1126.811 kb on + strand, within BBR_RS14940at 1126.895 kb on + strand, within BBR_RS14940at 1126.957 kb on - strand, within BBR_RS14940at 1127.040 kb on - strand, within BBR_RS14940at 1127.040 kb on - strand, within BBR_RS14940at 1127.128 kb on + strand, within BBR_RS14940

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1
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1,124,680 + BBR_RS14930 0.47 +2.4
1,124,687 + BBR_RS14930 0.48 +1.5
1,124,805 + BBR_RS14930 0.56 -0.9
1,124,805 + BBR_RS14930 0.56 -2.6
1,124,825 - BBR_RS14930 0.57 +0.7
1,124,897 + BBR_RS14930 0.62 -0.9
1,124,946 + BBR_RS14930 0.65 -1.3
1,125,035 - BBR_RS14930 0.71 -2.0
1,125,035 - BBR_RS14930 0.71 -1.6
1,125,038 + BBR_RS14930 0.71 +0.0
1,125,038 - BBR_RS14930 0.71 +0.4
1,125,072 - BBR_RS14930 0.74 -2.9
1,125,103 + BBR_RS14930 0.76 -2.0
1,125,175 + BBR_RS14930 0.81 +0.7
1,125,184 - BBR_RS14930 0.81 +0.4
1,125,196 - BBR_RS14930 0.82 -2.5
1,125,275 - BBR_RS14930 0.87 -0.8
1,125,300 - BBR_RS14930 0.89 -0.2
1,125,301 + BBR_RS14930 0.89 +1.9
1,125,336 + +0.7
1,125,344 - +0.2
1,125,344 - +0.8
1,125,350 + +0.3
1,125,380 + -1.8
1,125,427 - +1.0
1,125,429 + -0.3
1,125,561 - +1.0
1,125,612 + -0.3
1,125,638 + +0.6
1,125,642 - -1.0
1,125,696 + +0.5
1,125,745 + BBR_RS20875 0.18 +0.4
1,125,871 + BBR_RS20875 0.38 +2.1
1,125,881 + BBR_RS20875 0.40 -1.2
1,125,884 - BBR_RS20875 0.41 +3.8
1,125,927 + BBR_RS20875 0.48 +0.7
1,125,929 - BBR_RS20875 0.48 -0.4
1,125,954 + BBR_RS20875 0.52 +0.0
1,125,998 - BBR_RS20875 0.59 -1.6
1,126,002 + BBR_RS20875 0.60 +2.5
1,126,002 + BBR_RS20875 0.60 +1.9
1,126,009 + BBR_RS20875 0.61 +1.5
1,126,010 - BBR_RS20875 0.61 -0.4
1,126,037 - BBR_RS20875 0.66 +1.2
1,126,083 - BBR_RS20875 0.73 -2.3
1,126,149 + BBR_RS20875 0.84 -0.4
1,126,149 + BBR_RS20875 0.84 -1.1
1,126,157 + BBR_RS20875 0.86 -0.0
1,126,204 - +0.0
1,126,246 - +0.8
1,126,272 - -2.1
1,126,293 + +1.5
1,126,299 + -0.8
1,126,299 + +0.2
1,126,354 - +0.4
1,126,408 - BBR_RS14940 0.11 +1.3
1,126,438 - BBR_RS14940 0.13 +1.0
1,126,446 + BBR_RS14940 0.14 -0.0
1,126,484 - BBR_RS14940 0.17 -1.1
1,126,484 - BBR_RS14940 0.17 +0.7
1,126,492 - BBR_RS14940 0.18 -2.0
1,126,527 + BBR_RS14940 0.20 -1.6
1,126,535 + BBR_RS14940 0.21 +0.3
1,126,610 + BBR_RS14940 0.27 +1.5
1,126,799 - BBR_RS14940 0.43 +0.4
1,126,811 + BBR_RS14940 0.44 -2.0
1,126,895 + BBR_RS14940 0.51 +0.9
1,126,957 - BBR_RS14940 0.56 -0.4
1,127,040 - BBR_RS14940 0.62 +0.8
1,127,040 - BBR_RS14940 0.62 +0.2
1,127,128 + BBR_RS14940 0.70 +1.0

Or see this region's nucleotide sequence