Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20705

Experiment: CDM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12490 and BBR_RS20705 are separated by 366 nucleotidesBBR_RS20705 and BBR_RS12495 are separated by 36 nucleotides BBR_RS12490: BBR_RS12490 - hypothetical protein, at 554,298 to 554,694 _RS12490 BBR_RS20705: BBR_RS20705 - hypothetical protein, at 555,061 to 555,342 _RS20705 BBR_RS12495: BBR_RS12495 - sugar ABC transporter substrate-binding protein, at 555,379 to 556,728 _RS12495 Position (kb) 555 556Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 554.067 kb on - strandat 554.067 kb on - strandat 554.067 kb on - strandat 554.095 kb on + strandat 554.103 kb on + strandat 554.103 kb on - strandat 554.108 kb on + strandat 554.116 kb on - strandat 554.116 kb on - strandat 554.143 kb on + strandat 554.159 kb on - strandat 554.184 kb on - strandat 554.189 kb on + strandat 554.294 kb on + strandat 554.334 kb on + strandat 554.334 kb on + strandat 554.344 kb on + strand, within BBR_RS12490at 554.344 kb on + strand, within BBR_RS12490at 554.352 kb on - strand, within BBR_RS12490at 554.352 kb on - strand, within BBR_RS12490at 554.394 kb on - strand, within BBR_RS12490at 554.396 kb on + strand, within BBR_RS12490at 554.404 kb on - strand, within BBR_RS12490at 554.411 kb on + strand, within BBR_RS12490at 554.421 kb on - strand, within BBR_RS12490at 554.435 kb on - strand, within BBR_RS12490at 554.440 kb on - strand, within BBR_RS12490at 554.443 kb on - strand, within BBR_RS12490at 554.443 kb on - strand, within BBR_RS12490at 554.501 kb on - strand, within BBR_RS12490at 554.591 kb on - strand, within BBR_RS12490at 554.643 kb on - strand, within BBR_RS12490at 554.703 kb on + strandat 554.706 kb on + strandat 554.714 kb on - strandat 554.757 kb on - strandat 554.776 kb on + strandat 554.785 kb on - strandat 554.825 kb on + strandat 554.849 kb on - strandat 554.851 kb on + strandat 554.859 kb on - strandat 554.859 kb on - strandat 554.879 kb on - strandat 554.882 kb on + strandat 554.882 kb on + strandat 554.927 kb on - strandat 554.931 kb on + strandat 554.932 kb on + strandat 554.941 kb on + strandat 554.949 kb on - strandat 554.953 kb on + strandat 554.978 kb on - strandat 554.982 kb on + strandat 554.990 kb on - strandat 554.990 kb on - strandat 555.002 kb on - strandat 555.012 kb on - strandat 555.012 kb on - strandat 555.012 kb on - strandat 555.014 kb on + strandat 555.022 kb on - strandat 555.034 kb on - strandat 555.049 kb on - strandat 555.049 kb on - strandat 555.064 kb on + strandat 555.189 kb on + strand, within BBR_RS20705at 555.189 kb on + strand, within BBR_RS20705at 555.277 kb on - strand, within BBR_RS20705at 555.277 kb on - strand, within BBR_RS20705at 555.327 kb on + strandat 555.327 kb on + strandat 555.389 kb on + strandat 555.467 kb on + strandat 555.467 kb on - strandat 555.471 kb on + strandat 555.471 kb on + strandat 555.475 kb on - strandat 555.477 kb on + strandat 555.492 kb on + strandat 555.499 kb on + strandat 555.550 kb on + strand, within BBR_RS12495at 555.570 kb on + strand, within BBR_RS12495at 555.602 kb on - strand, within BBR_RS12495at 555.604 kb on + strand, within BBR_RS12495at 555.612 kb on - strand, within BBR_RS12495at 555.625 kb on - strand, within BBR_RS12495at 555.625 kb on - strand, within BBR_RS12495at 555.627 kb on + strand, within BBR_RS12495at 555.627 kb on + strand, within BBR_RS12495at 555.627 kb on + strand, within BBR_RS12495at 555.635 kb on - strand, within BBR_RS12495at 555.686 kb on + strand, within BBR_RS12495at 555.699 kb on - strand, within BBR_RS12495at 555.721 kb on + strand, within BBR_RS12495at 555.780 kb on - strand, within BBR_RS12495at 555.782 kb on + strand, within BBR_RS12495at 555.786 kb on + strand, within BBR_RS12495at 555.809 kb on - strand, within BBR_RS12495at 555.832 kb on + strand, within BBR_RS12495at 555.840 kb on - strand, within BBR_RS12495at 555.864 kb on - strand, within BBR_RS12495at 555.888 kb on + strand, within BBR_RS12495at 555.950 kb on + strand, within BBR_RS12495at 555.969 kb on + strand, within BBR_RS12495at 555.977 kb on + strand, within BBR_RS12495at 555.984 kb on + strand, within BBR_RS12495at 555.994 kb on + strand, within BBR_RS12495at 555.999 kb on + strand, within BBR_RS12495at 556.002 kb on - strand, within BBR_RS12495at 556.002 kb on - strand, within BBR_RS12495at 556.003 kb on + strand, within BBR_RS12495at 556.003 kb on + strand, within BBR_RS12495at 556.021 kb on - strand, within BBR_RS12495at 556.021 kb on - strand, within BBR_RS12495at 556.021 kb on - strand, within BBR_RS12495at 556.028 kb on - strand, within BBR_RS12495at 556.044 kb on + strand, within BBR_RS12495at 556.065 kb on + strand, within BBR_RS12495at 556.065 kb on + strand, within BBR_RS12495at 556.065 kb on + strand, within BBR_RS12495at 556.067 kb on - strand, within BBR_RS12495at 556.067 kb on - strand, within BBR_RS12495at 556.067 kb on - strand, within BBR_RS12495at 556.105 kb on + strand, within BBR_RS12495at 556.105 kb on + strand, within BBR_RS12495at 556.118 kb on + strand, within BBR_RS12495at 556.128 kb on + strand, within BBR_RS12495at 556.128 kb on + strand, within BBR_RS12495at 556.128 kb on - strand, within BBR_RS12495at 556.135 kb on + strand, within BBR_RS12495at 556.136 kb on - strand, within BBR_RS12495at 556.145 kb on + strand, within BBR_RS12495at 556.145 kb on + strand, within BBR_RS12495at 556.145 kb on + strand, within BBR_RS12495at 556.153 kb on + strand, within BBR_RS12495at 556.153 kb on + strand, within BBR_RS12495at 556.153 kb on - strand, within BBR_RS12495at 556.153 kb on - strand, within BBR_RS12495at 556.160 kb on + strand, within BBR_RS12495at 556.189 kb on + strand, within BBR_RS12495at 556.243 kb on - strand, within BBR_RS12495at 556.243 kb on - strand, within BBR_RS12495at 556.341 kb on + strand, within BBR_RS12495

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1
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554,067 - -0.1
554,067 - -4.0
554,067 - +1.2
554,095 + +1.9
554,103 + +0.1
554,103 - -0.6
554,108 + -1.3
554,116 - -2.8
554,116 - -0.9
554,143 + +0.1
554,159 - -1.8
554,184 - -2.3
554,189 + -1.6
554,294 + -0.2
554,334 + +1.3
554,334 + -1.5
554,344 + BBR_RS12490 0.12 +0.3
554,344 + BBR_RS12490 0.12 +1.3
554,352 - BBR_RS12490 0.14 +1.1
554,352 - BBR_RS12490 0.14 +0.9
554,394 - BBR_RS12490 0.24 -0.2
554,396 + BBR_RS12490 0.25 -0.1
554,404 - BBR_RS12490 0.27 +1.5
554,411 + BBR_RS12490 0.28 +0.6
554,421 - BBR_RS12490 0.31 +1.3
554,435 - BBR_RS12490 0.35 -1.4
554,440 - BBR_RS12490 0.36 +0.9
554,443 - BBR_RS12490 0.37 -0.4
554,443 - BBR_RS12490 0.37 -1.3
554,501 - BBR_RS12490 0.51 -1.5
554,591 - BBR_RS12490 0.74 +0.1
554,643 - BBR_RS12490 0.87 +0.1
554,703 + -2.5
554,706 + -0.9
554,714 - -1.9
554,757 - -1.0
554,776 + +1.0
554,785 - -1.6
554,825 + -2.2
554,849 - +0.3
554,851 + -0.0
554,859 - -0.2
554,859 - -0.5
554,879 - +1.6
554,882 + -0.6
554,882 + -3.0
554,927 - -1.9
554,931 + +0.5
554,932 + -1.8
554,941 + -1.8
554,949 - +1.4
554,953 + -1.4
554,978 - +0.3
554,982 + -1.5
554,990 - -1.7
554,990 - -0.1
555,002 - -2.5
555,012 - -0.4
555,012 - -0.3
555,012 - +1.1
555,014 + -0.1
555,022 - +0.7
555,034 - -1.5
555,049 - -1.4
555,049 - -3.0
555,064 + -1.5
555,189 + BBR_RS20705 0.45 -2.4
555,189 + BBR_RS20705 0.45 -0.3
555,277 - BBR_RS20705 0.77 -1.6
555,277 - BBR_RS20705 0.77 -0.6
555,327 + -0.2
555,327 + +1.1
555,389 + -0.1
555,467 + -0.1
555,467 - -1.6
555,471 + +0.2
555,471 + -0.9
555,475 - -0.2
555,477 + -0.4
555,492 + +1.0
555,499 + -0.9
555,550 + BBR_RS12495 0.13 -1.5
555,570 + BBR_RS12495 0.14 -1.4
555,602 - BBR_RS12495 0.17 +0.0
555,604 + BBR_RS12495 0.17 -0.9
555,612 - BBR_RS12495 0.17 -0.2
555,625 - BBR_RS12495 0.18 -0.1
555,625 - BBR_RS12495 0.18 -1.1
555,627 + BBR_RS12495 0.18 +0.3
555,627 + BBR_RS12495 0.18 +1.0
555,627 + BBR_RS12495 0.18 -0.8
555,635 - BBR_RS12495 0.19 -0.6
555,686 + BBR_RS12495 0.23 +0.7
555,699 - BBR_RS12495 0.24 +0.7
555,721 + BBR_RS12495 0.25 -3.4
555,780 - BBR_RS12495 0.30 -2.2
555,782 + BBR_RS12495 0.30 -0.7
555,786 + BBR_RS12495 0.30 -0.3
555,809 - BBR_RS12495 0.32 -1.7
555,832 + BBR_RS12495 0.34 +0.4
555,840 - BBR_RS12495 0.34 +0.5
555,864 - BBR_RS12495 0.36 -0.1
555,888 + BBR_RS12495 0.38 +0.5
555,950 + BBR_RS12495 0.42 +1.1
555,969 + BBR_RS12495 0.44 -0.7
555,977 + BBR_RS12495 0.44 -0.2
555,984 + BBR_RS12495 0.45 -1.0
555,994 + BBR_RS12495 0.46 +1.6
555,999 + BBR_RS12495 0.46 +0.0
556,002 - BBR_RS12495 0.46 -0.1
556,002 - BBR_RS12495 0.46 +0.2
556,003 + BBR_RS12495 0.46 +1.5
556,003 + BBR_RS12495 0.46 -1.0
556,021 - BBR_RS12495 0.48 +0.7
556,021 - BBR_RS12495 0.48 +0.8
556,021 - BBR_RS12495 0.48 +0.5
556,028 - BBR_RS12495 0.48 +0.0
556,044 + BBR_RS12495 0.49 +1.7
556,065 + BBR_RS12495 0.51 +0.5
556,065 + BBR_RS12495 0.51 -2.1
556,065 + BBR_RS12495 0.51 +0.8
556,067 - BBR_RS12495 0.51 -0.1
556,067 - BBR_RS12495 0.51 -2.8
556,067 - BBR_RS12495 0.51 +0.1
556,105 + BBR_RS12495 0.54 +0.8
556,105 + BBR_RS12495 0.54 -3.4
556,118 + BBR_RS12495 0.55 +0.3
556,128 + BBR_RS12495 0.55 +0.2
556,128 + BBR_RS12495 0.55 +0.7
556,128 - BBR_RS12495 0.55 -0.4
556,135 + BBR_RS12495 0.56 -1.2
556,136 - BBR_RS12495 0.56 -0.2
556,145 + BBR_RS12495 0.57 +1.0
556,145 + BBR_RS12495 0.57 -0.4
556,145 + BBR_RS12495 0.57 -0.5
556,153 + BBR_RS12495 0.57 -0.8
556,153 + BBR_RS12495 0.57 +1.7
556,153 - BBR_RS12495 0.57 -2.9
556,153 - BBR_RS12495 0.57 +1.9
556,160 + BBR_RS12495 0.58 +0.0
556,189 + BBR_RS12495 0.60 +0.3
556,243 - BBR_RS12495 0.64 +0.5
556,243 - BBR_RS12495 0.64 -1.1
556,341 + BBR_RS12495 0.71 -1.9

Or see this region's nucleotide sequence