Experiment: CDM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13670 and BBR_RS20790 are separated by 173 nucleotides BBR_RS20790 and BBR_RS13675 are separated by 36 nucleotides BBR_RS13675 and BBR_RS20795 are separated by 666 nucleotides BBR_RS20795 and BBR_RS20800 are separated by 4 nucleotides
BBR_RS13670: BBR_RS13670 - hypothetical protein, at 840,561 to 841,793
_RS13670
BBR_RS20790: BBR_RS20790 - hypothetical protein, at 841,967 to 842,164
_RS20790
BBR_RS13675: BBR_RS13675 - glutaredoxin-like protein, at 842,201 to 842,452
_RS13675
BBR_RS20795: BBR_RS20795 - cystathionine gamma-lyase, at 843,119 to 843,286
_RS20795
BBR_RS20800: BBR_RS20800 - hypothetical protein, at 843,291 to 843,473
_RS20800
BBR_RS13680: BBR_RS13680 - SPFH domain-containing protein, at 843,446 to 844,357
_RS13680
Position (kb) 842
843 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 841.208 kb on - strand, within BBR_RS13670 at 841.246 kb on - strand, within BBR_RS13670 at 841.248 kb on + strand, within BBR_RS13670 at 841.251 kb on - strand, within BBR_RS13670 at 841.251 kb on - strand, within BBR_RS13670 at 841.256 kb on - strand, within BBR_RS13670 at 841.261 kb on - strand, within BBR_RS13670 at 841.282 kb on - strand, within BBR_RS13670 at 841.294 kb on - strand, within BBR_RS13670 at 841.294 kb on - strand, within BBR_RS13670 at 841.344 kb on - strand, within BBR_RS13670 at 841.351 kb on - strand, within BBR_RS13670 at 841.371 kb on + strand, within BBR_RS13670 at 841.371 kb on + strand, within BBR_RS13670 at 841.386 kb on + strand, within BBR_RS13670 at 841.388 kb on + strand, within BBR_RS13670 at 841.405 kb on + strand, within BBR_RS13670 at 841.413 kb on - strand, within BBR_RS13670 at 841.413 kb on - strand, within BBR_RS13670 at 841.418 kb on - strand, within BBR_RS13670 at 841.451 kb on + strand, within BBR_RS13670 at 841.451 kb on + strand, within BBR_RS13670 at 841.477 kb on + strand, within BBR_RS13670 at 841.495 kb on + strand, within BBR_RS13670 at 841.585 kb on + strand, within BBR_RS13670 at 841.607 kb on + strand, within BBR_RS13670 at 841.654 kb on + strand, within BBR_RS13670 at 841.727 kb on - strand at 841.822 kb on + strand at 841.832 kb on + strand at 841.832 kb on + strand at 841.850 kb on - strand at 841.905 kb on - strand at 841.974 kb on - strand at 842.070 kb on - strand, within BBR_RS20790 at 842.077 kb on + strand, within BBR_RS20790 at 842.077 kb on + strand, within BBR_RS20790 at 842.077 kb on + strand, within BBR_RS20790 at 842.085 kb on - strand, within BBR_RS20790 at 842.085 kb on - strand, within BBR_RS20790 at 842.160 kb on + strand at 842.215 kb on + strand at 842.220 kb on + strand at 842.220 kb on + strand at 842.220 kb on + strand at 842.222 kb on + strand at 842.228 kb on - strand, within BBR_RS13675 at 842.228 kb on - strand, within BBR_RS13675 at 842.228 kb on - strand, within BBR_RS13675 at 842.257 kb on - strand, within BBR_RS13675 at 842.257 kb on - strand, within BBR_RS13675 at 842.262 kb on - strand, within BBR_RS13675 at 842.277 kb on - strand, within BBR_RS13675 at 842.278 kb on + strand, within BBR_RS13675 at 842.278 kb on + strand, within BBR_RS13675 at 842.278 kb on + strand, within BBR_RS13675 at 842.286 kb on - strand, within BBR_RS13675 at 842.286 kb on - strand, within BBR_RS13675 at 842.286 kb on - strand, within BBR_RS13675 at 842.286 kb on - strand, within BBR_RS13675 at 842.353 kb on + strand, within BBR_RS13675 at 842.365 kb on + strand, within BBR_RS13675 at 842.400 kb on + strand, within BBR_RS13675 at 842.408 kb on - strand, within BBR_RS13675 at 842.408 kb on - strand, within BBR_RS13675 at 842.510 kb on + strand at 842.518 kb on - strand at 842.518 kb on - strand at 842.552 kb on + strand at 842.562 kb on + strand at 842.628 kb on + strand at 842.628 kb on + strand at 842.695 kb on + strand at 842.695 kb on + strand at 842.700 kb on + strand at 842.708 kb on - strand at 842.717 kb on + strand at 842.767 kb on - strand at 842.785 kb on + strand at 842.937 kb on + strand at 842.943 kb on - strand at 843.008 kb on + strand at 843.064 kb on + strand at 843.072 kb on - strand at 843.072 kb on - strand at 843.111 kb on - strand at 843.233 kb on - strand, within BBR_RS20795 at 843.244 kb on + strand, within BBR_RS20795 at 843.275 kb on + strand at 843.285 kb on + strand at 843.323 kb on + strand, within BBR_RS20800 at 843.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 remove 841,208 - BBR_RS13670 0.52 +0.7 841,246 - BBR_RS13670 0.56 -1.6 841,248 + BBR_RS13670 0.56 -0.9 841,251 - BBR_RS13670 0.56 -0.9 841,251 - BBR_RS13670 0.56 -2.1 841,256 - BBR_RS13670 0.56 -0.4 841,261 - BBR_RS13670 0.57 -2.2 841,282 - BBR_RS13670 0.58 +0.3 841,294 - BBR_RS13670 0.59 -0.8 841,294 - BBR_RS13670 0.59 -0.4 841,344 - BBR_RS13670 0.64 +0.8 841,351 - BBR_RS13670 0.64 -1.4 841,371 + BBR_RS13670 0.66 +0.1 841,371 + BBR_RS13670 0.66 +0.4 841,386 + BBR_RS13670 0.67 +0.9 841,388 + BBR_RS13670 0.67 +0.2 841,405 + BBR_RS13670 0.68 -0.3 841,413 - BBR_RS13670 0.69 +1.0 841,413 - BBR_RS13670 0.69 -1.9 841,418 - BBR_RS13670 0.70 -0.6 841,451 + BBR_RS13670 0.72 -0.6 841,451 + BBR_RS13670 0.72 +0.1 841,477 + BBR_RS13670 0.74 -0.3 841,495 + BBR_RS13670 0.76 +1.4 841,585 + BBR_RS13670 0.83 +1.4 841,607 + BBR_RS13670 0.85 -2.9 841,654 + BBR_RS13670 0.89 -0.1 841,727 - +0.3 841,822 + +1.1 841,832 + +0.1 841,832 + -2.1 841,850 - +0.7 841,905 - +1.9 841,974 - -0.8 842,070 - BBR_RS20790 0.52 -2.2 842,077 + BBR_RS20790 0.56 -0.3 842,077 + BBR_RS20790 0.56 +1.1 842,077 + BBR_RS20790 0.56 -1.7 842,085 - BBR_RS20790 0.60 +0.8 842,085 - BBR_RS20790 0.60 -0.5 842,160 + -2.4 842,215 + +0.0 842,220 + +0.5 842,220 + -1.5 842,220 + +0.6 842,222 + -0.3 842,228 - BBR_RS13675 0.11 -1.8 842,228 - BBR_RS13675 0.11 -0.3 842,228 - BBR_RS13675 0.11 -2.3 842,257 - BBR_RS13675 0.22 -1.0 842,257 - BBR_RS13675 0.22 -0.1 842,262 - BBR_RS13675 0.24 +0.2 842,277 - BBR_RS13675 0.30 -1.6 842,278 + BBR_RS13675 0.31 +0.7 842,278 + BBR_RS13675 0.31 -2.9 842,278 + BBR_RS13675 0.31 -0.2 842,286 - BBR_RS13675 0.34 +0.9 842,286 - BBR_RS13675 0.34 -1.3 842,286 - BBR_RS13675 0.34 -2.4 842,286 - BBR_RS13675 0.34 +0.4 842,353 + BBR_RS13675 0.60 +0.7 842,365 + BBR_RS13675 0.65 +0.0 842,400 + BBR_RS13675 0.79 -1.3 842,408 - BBR_RS13675 0.82 -2.3 842,408 - BBR_RS13675 0.82 -0.4 842,510 + +1.8 842,518 - -2.8 842,518 - -0.3 842,552 + +0.9 842,562 + +0.0 842,628 + +0.5 842,628 + +0.7 842,695 + +0.2 842,695 + -0.9 842,700 + +0.5 842,708 - -0.0 842,717 + +0.6 842,767 - +0.3 842,785 + -1.1 842,937 + -1.7 842,943 - -0.4 843,008 + -0.5 843,064 + -0.4 843,072 - +1.5 843,072 - +1.1 843,111 - -0.9 843,233 - BBR_RS20795 0.68 -0.6 843,244 + BBR_RS20795 0.74 -0.1 843,275 + +0.2 843,285 + -1.8 843,323 + BBR_RS20800 0.17 -1.1 843,450 - -1.1
Or see this region's nucleotide sequence